PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00013760-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 198aa MW: 21871.8 Da PI: 10.1906 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 98.4 | 5.4e-31 | 15 | 69 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++rYkeClkNhA+ +G+havDGCgEf+p+ g++g+ ++lkCaACgCHRnFHRre+e SMil_00013760-RA_Salv 15 RARYKECLKNHAVGIGAHAVDGCGEFLPA-GDDGSLESLKCAACGCHRNFHRRESE 69 789*************************9.999********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 5.4E-29 | 16 | 68 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.6E-29 | 17 | 67 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-19 | 18 | 69 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.698 | 18 | 67 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.33E-18 | 125 | 196 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-30 | 127 | 197 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.568 | 133 | 197 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 3.0E-25 | 135 | 191 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MSRATRSRAR RRCGRARYKE CLKNHAVGIG AHAVDGCGEF LPAGDDGSLE SLKCAACGCH 60 RNFHRRESEG YGNQQLVLAH HPHPLGHFGY RSSGGYLQVG PPQRAAPVAL ALPSSSGGAG 120 EMEDYYSGGG GGSSKKRFRT KFTAEQKDRM LRLAERLDWK IQKQDEELVQ QFCSEAGIKR 180 HVLKVWMHNN KHTLGKKA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 9e-25 | 135 | 193 | 17 | 75 | ZF-HD homeobox family protein |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011100018.1 | 6e-93 | zinc-finger homeodomain protein 1-like | ||||
Swissprot | A2Z259 | 2e-63 | ZHD1_ORYSI; Zinc-finger homeodomain protein 1 | ||||
Swissprot | Q6YXH5 | 3e-63 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A4D8ZTX2 | 8e-95 | A0A4D8ZTX2_SALSN; Uncharacterized protein | ||||
STRING | GLYMA02G04550.2 | 3e-74 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 4e-60 | homeobox protein 22 |
Publications ? help Back to Top | |||
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