PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00013678-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C3H
Protein Properties Length: 375aa    MW: 40854.8 Da    PI: 8.3197
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00013678-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.31.3e-08113133425
                            ---SGGGGTS--TTTTT-SS-S CS
                zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                            ++C+++ + G C+yG++CkF H
  SMil_00013678-RA_Salv 113 KICNYYVQ-GSCRYGENCKFLH 133
                            68**9999.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00282651IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.6012652IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596109136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-8110134IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4110135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-7113133IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-6113133IPR000571Zinc finger, CCCH-type
SuperFamilySSF509781.19E-33131368IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.102.7E-29134367IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003205.9E-5139178IPR001680WD40 repeat
PfamPF004006.5E-5142178IPR001680WD40 repeat
PROSITE profilePS5008214.285146187IPR001680WD40 repeat
PROSITE profilePS5029413.132146187IPR017986WD40-repeat-containing domain
PROSITE patternPS006780165179IPR019775WD40 repeat, conserved site
SMARTSM003204.5218255IPR001680WD40 repeat
SMARTSM003205.5262326IPR001680WD40 repeat
SMARTSM003200.63329366IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MDVDGGRRIF NRLGPSSSSD NLNNNSRQQK VCFHWENGKC TRNPCPFLHA ELPTAANGKR  60
GHQGFGAEDN YRGGGGLRRS GNYNFSNNNS WGRPQSQHPA SGNRNFVRKV EKKICNYYVQ  120
GSCRYGENCK FLHQWSTDCF TLLTPLEGHK QAVTGITLPS GSDKLYSGSE DETVRVWDCQ  180
SGQLAGVVNL GCSVGCMLSE GPWVFVGLTN LVKAWNVQTS MELSLSGPVG QVYSLVVGND  240
LLFAGNKDGT ILAWKFNAAT NCFEPAASLK GHTLAVVTLV VGGNRMYSGS MDHTIKGLIT  300
LCGMHDSESK PVLFCSCNDN SVRVYDLPSF SERGKIYSKE EVRSIQIGPG GLFFTGDGSG  360
QVRVWKWSAE STATS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-131263658323Tako8
6g6n_A2e-131263658323Tako8
6g6n_B2e-131263658323Tako8
6g6n_C2e-131263658323Tako8
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076248.10.0zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ11e-134C3H63_ARATH; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A4D9BGB20.0A0A4D9BGB2_SALSN; Uncharacterized protein
STRINGMigut.F00387.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28842134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.11e-138C3H family protein