PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00013659-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C3H
Protein Properties Length: 330aa    MW: 37009.6 Da    PI: 7.2364
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00013659-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.39.7e-0792117127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                            ykt+lC  f++ G C++ ++C FaH++
  SMil_00013659-RA_Salv  92 YKTRLCFQFRA-GSCPFDENCDFAHSM 117
                            9*****97777.*************95 PP
2zf-CCCH277.8e-09220246127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                            +k +lC+ +  tG+C yG +C FaHg+
  SMil_00013659-RA_Salv 220 WKSRLCNKWESTGICEYGRNCVFAHGF 246
                            799**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.62E-889122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-1390123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.28691118IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-691117IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.685159187IPR000571Zinc finger, CCCH-type
SMARTSM003562.9160186IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-9217251IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-12217250IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-4219246IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-7220246IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.61220247IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
LAKFYLPMEC NRGTGSHVAN VVGFQSGNPG NSAKDGMCER ETSVHTNLTS NCNERSFQFE  60
VESEPPNKRA KNDLLEDSTT FDRKKTIGKV LYKTRLCFQF RAGSCPFDEN CDFAHSMEEL  120
RELPHNWQEI MATHKEELME LSEQPRDVFQ IPAEETHRPS LRQYCKGFLS RVGCQYGENC  180
LLIHNEHYME RKSAAICLIP GPGSGFGSNG SKLTSNASHW KSRLCNKWES TGICEYGRNC  240
VFAHGFAELQ HYSGWRVKEE DIGSSAFGAN QVAVPAKASV GAVGAPASLV PYSYRIGAPS  300
RRLPAEIPIR RWKGPDKISK IYGDWIDDLE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092146.13e-89zinc finger CCCH domain-containing protein 56-like
RefseqXP_020549081.13e-89zinc finger CCCH domain-containing protein 56-like
RefseqXP_020549089.13e-89zinc finger CCCH domain-containing protein 56-like
RefseqXP_020549092.13e-89zinc finger CCCH domain-containing protein 56-like
RefseqXP_020549094.13e-89zinc finger CCCH domain-containing protein 56-like
TrEMBLA0A4D9B2A01e-121A0A4D9B2A0_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37292343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.13e-55C3H family protein