PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00013343-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

TCP

Protein Properties

Length: 281aa MW: 29430.1 Da PI: 10.5245

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00013343-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	127.2	1.7e-39	51	155	4	89
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.. 88 k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+i+++tgt++++a+++ ++s +ss+ + s++ SMil_00013343-RA_Salv 51 VKKPSKDRHTKVDGRGRRIRMPALCAARVFQLTKELGHKSDGETIEWLLQQAEPSIIAATGTGTIPANFStLNVSLRSSGTTISAPps 138 5899***************************************************************999877777777774444444 PP TCP 89 ................k 89 + SMil_00013343-RA_Salv 139 ksaplflggaagmlgfH 155 44455555555555541 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.5E-37	55	167	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.652	55	109	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MLSMEQGATT NSGHREPPPS SLQLVSTHHQ SQPRASPPSS TSADAAKALV VKKPSKDRHT 60 KVDGRGRRIR MPALCAARVF QLTKELGHKS DGETIEWLLQ QAEPSIIAAT GTGTIPANFS 120 TLNVSLRSSG TTISAPPSKS APLFLGGAAG MLGFHHQLAA FGQQDPDDNS YMKKRFREDP 180 ASAGSPKPGE PGSNTKPSSG STTGCSFIPA PAMWAMAPAA ATNMGNTFWM LPVTGGGAAT 240 ATAAQQEWQH RQSSMQRVGG FEFSGAGRFS PVQFGSMVNV G

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012854957.1	1e-121	PREDICTED: transcription factor TCP23-like
Swissprot	Q9LQF0	5e-64	TCP23_ARATH; Transcription factor TCP23
TrEMBL	A0A2Z7BFH2	1e-122	A0A2Z7BFH2_9LAMI; TCP transcription factor 12
STRING	Migut.C01285.1.p	1e-120	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35560.1	7e-53	TCP family protein