PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00013118-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family TCP
Protein Properties Length: 315aa    MW: 35483 Da    PI: 10.3713
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00013118-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.64.6e-38792071133
                    TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasns 85 
                            aa+kkdrhski T++g+RdRR+Rls+++a++fFdLqd LGfdk+s t++WLl+ + pai +l +  +  +s++   e+  + +sa+  
  SMil_00013118-RA_Salv  79 AAPKKDRHSKINTARGPRDRRMRLSLDIARKFFDLQDLLGFDKASRTVDWLLRSSRPAIRALERGRAGLQSDSctsEECGEAVSAA-- 164
                            689*************************************************************9444443332222222222222.. PP

                    TCP  86 ssgkaaksaa.kskksqksaasalnlakesrakarararertrekmrik 133
                                +++ +   +  ++++ a    +a+esr kar+rarert++k r+ 
  SMil_00013118-RA_Salv 165 ----SRRGKRvRRGGARQKRA--TVVARESRRKARERARERTSQKRRLM 207
                            ....22222224444444444..89999****************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.0E-3381204IPR005333Transcription factor, TCP
PROSITE profilePS5136933.82382140IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.059186203IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MLSSNSSSCN HNPNYTPFSE NDITSFTSSK SPDYPNFLVG LEDYQDLYLH HFLDHVYLNT  60
LPQHDIPAAA VAVPATAAAA PKKDRHSKIN TARGPRDRRM RLSLDIARKF FDLQDLLGFD  120
KASRTVDWLL RSSRPAIRAL ERGRAGLQSD SCTSEECGEA VSAASRRGKR VRRGGARQKR  180
ATVVARESRR KARERARERT SQKRRLMRER ESESGGGVPI LYGDVKVVEE FSADEAWICG  240
AADQPWNSFH LHQTQHAAFF HQLRRSSLSL SVVPSRRLLR LQITVVHCYR HVRFLVSPLQ  300
LVDESDCGAA LSSSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188204RRKARERARERTSQKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A4D8ZAB77e-66A0A4D8ZAB7_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24822256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-24TCP domain protein 12