PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00012939-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family B3
Protein Properties Length: 403aa    MW: 47200.9 Da    PI: 3.9276
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00012939-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.41.2e-131271991288
                            HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                     B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                            +s+ + +p + +++++g+   +  +tl+d + + W+v++  +++ +++++ kGW +F  +n+L+ +D+v F++++++
  SMil_00012939-RA_Salv 127 TSQKMEFPPDSVAKMQGV--LGSRVTLRDAHRNLWRVEV--ERGENGFYFDKGWPQFYLENDLEHNDVVAFEYKHDD 199
                            445577899999999888..6668***************..*******************************98753 PP
2B347.82.6e-15311394894
                            -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                     B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                            s  ++++ l +p++ +ee ++k e+   + +ed sgr+We k++ +k  gr++ t+GWk+ ++ang+   D+++ ++++++  +l++
  SMil_00012939-RA_Salv 311 SRKSRKNELHIPNHLIEEGKLKIES--RMLMEDASGRRWESKIKKWKD-GRVWCTRGWKRLCDANGIGPDDICICEFVQQDAYTLCM 394
                            66678899********999888555..7999************87777.589***********************998766555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.491116209IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.2E-16117211IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-17119211IPR015300DNA-binding pseudobarrel domain
CDDcd100171.60E-9120206No hitNo description
SMARTSM010192.4E-7121209IPR003340B3 DNA binding domain
PfamPF023622.4E-11127198IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-17299391IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-16300392IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.491304400IPR003340B3 DNA binding domain
CDDcd100172.85E-8305381No hitNo description
SMARTSM010192.3E-7307400IPR003340B3 DNA binding domain
PfamPF023621.0E-12310392IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
DDDDDDDDDD DDDDDDDDDD DDDDDDDDDD DDDDDDDDDD DDDDDDDDDD DDDDDDDDDD  60
DDDDDDDDDD DDDDDDDDDD DDDDYYYYLF KLSLSHTHTH MKRSRRSHVA KSLPMEEELS  120
FFKVISTSQK MEFPPDSVAK MQGVLGSRVT LRDAHRNLWR VEVERGENGF YFDKGWPQFY  180
LENDLEHNDV VAFEYKHDDL LDFRLFGRDA CQKFGVKKDA EDEDEDEDED YEVVCISKNK  240
AKSNKGLSSI HTSSKRRVEE EEIEMKMKES KSRSSPSSSS LRRDINDYYG HDIFESGRAI  300
RPKNPYFVSR SRKSRKNELH IPNHLIEEGK LKIESRMLME DASGRRWESK IKKWKDGRVW  360
CTRGWKRLCD ANGIGPDDIC ICEFVQQDAY TLCMLVRVVD VVK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A4D8Y0Q78e-83A0A4D8Y0Q7_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.12e-06B3 family protein