PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00012892-RA_Salv
Common NameMYB62
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 336aa    MW: 36762.1 Da    PI: 8.3467
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00012892-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.3e-181966148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WTt Ed+ll+++vk++G g+W+++ r  g+ R++k+c++rw ++l
  SMil_00012892-RA_Salv 19 KGPWTTSEDLLLLEYVKKHGEGNWNAVQRNSGLMRCGKSCRLRWANHL 66
                           79******************************************9986 PP
2Myb_DNA-binding49.69e-1672115146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            +g+++++E+ l+v++++++G++ W++ a+ ++ gRt++++k++w++
  SMil_00012892-RA_Salv  72 KGAFSPDEENLIVELHAKMGNK-WARMASQLP-GRTDNEIKNYWNT 115
                            799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.8E-231369IPR009057Homeodomain-like
PROSITE profilePS5129416.4341466IPR017930Myb domain
SuperFamilySSF466898.99E-3017113IPR009057Homeodomain-like
SMARTSM007173.2E-141868IPR001005SANT/Myb domain
PfamPF002497.7E-161966IPR001005SANT/Myb domain
CDDcd001672.71E-122166No hitNo description
PROSITE profilePS5129424.96167121IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-2570120IPR009057Homeodomain-like
SMARTSM007175.2E-1671119IPR001005SANT/Myb domain
PfamPF002497.5E-1572115IPR001005SANT/Myb domain
CDDcd001671.20E-1174117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MAPDVCEGLR NSSRHALKKG PWTTSEDLLL LEYVKKHGEG NWNAVQRNSG LMRCGKSCRL  60
RWANHLRPHL KKGAFSPDEE NLIVELHAKM GNKWARMASQ LPGRTDNEIK NYWNTRLKRR  120
QRAGLPIYPH EIAEQGQQHR RSNPPQPSLT SLHRRNPNPL ITFASPMIAS SEISRAAPHL  180
YANNHQLKLY HDGINGGLTL SLDASNSLMS SSTFFNQGLV VNQLPINSLV HQYNSLNPVG  240
YGLGALGLPS IQSAAVLTPA ASSSDFVAAA SSDGAEDFEV ERRSRSSGML EDLFGESQAL  300
AYCGKGGGNL HEEEGADFGV SHGGSSSHES YEGMSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-30171205107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594160.0KF059416.1 Salvia miltiorrhiza MYB-related transcription factor (MYB62) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100282.21e-119transcription factor MYB101
TrEMBLA0A075BMI00.0A0A075BMI0_SALMI; MYB-related transcription factor
STRINGMigut.M00456.1.p2e-88(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.22e-74myb domain protein 101