PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00012652-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

FAR1

Protein Properties

Length: 630aa MW: 70466.7 Da PI: 6.6507

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00012652-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52.7	1.5e-16	156	231	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY++YA++ GFs+ + + +++k +g i++ +f Cs e +++++ ++ C+a+l+++++++g+w+vtk++++HnH+ SMil_00012652-RA_Salv 156 EFYDSYARQEGFSTHVGQYTRNKPDGPIVSWEFFCSSEVFKRKNVES--------------CNAMLQIERKDTGTWVVTKFVEDHNHS 229 6**************************************998877..............************************9 PP FAR1 89 la 90 ++ SMil_00012652-RA_Salv 230 IV 231 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.7E-13	156	231	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	11.202	337	373	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.5E-10	339	371	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.5E-7	348	375	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 630 aa Download sequence Send to blast
MKKRVERAGE GGGWMRSRRA VAVEEEERRS RRGEEERRRV PVRFEPGTGP WPCLVTYPKK 60 EKKLSADHPP PFPPWVSLQI NQHTVELFAG IVWFDEMDNE VVEVDMQKRQ KSREAPTQHG 120 DDEAENLSGI STSQADAGNN KPYVNMEFES QEAAREFYDS YARQEGFSTH VGQYTRNKPD 180 GPIVSWEFFC SSEVFKRKNV ESCNAMLQIE RKDTGTWVVT KFVEDHNHSI VSPSKVHFLR 240 PRRHFAGATK NALPESADNQ NDVMVSVDGN HVLYDSNLVM RNTSPIEANP VAKNMSPAET 300 ISVGRTASCV ETSRATTSSV PVMPLQVAKY EHDHKAYIVI LDVSEMNASC SCQMFEYSGV 360 LCRHILTVFT VTNVLTVPSQ YILKRWTRDA RAGSLDEQDT GVSAESLTVR FNNLCREALK 420 FAEEGAIAVE TYNAAVDALQ EGVRKIALVK KFVAKNMPAT CQSSGNFQDN GSKKAFVTTP 480 DMIPSLWPWQ DALSNRFNLN DAGVPAADLS QPTLASLAIN RDGVLADNTV VLTCFKSMTW 540 VIENKSTASK VALINLKLQD YGKAPSGETE VQFRLTRTTL EPMLKSMAYI SQQLSAPANK 600 VAVINLKVLS SVYEIQFYLS EVLYEARVSF

Sequence ? help Back to Top

Protein Sequence Length: 630 aa Download sequence Send to blast

MKKRVERAGE GGGWMRSRRA VAVEEEERRS RRGEEERRRV PVRFEPGTGP WPCLVTYPKK  60
EKKLSADHPP PFPPWVSLQI NQHTVELFAG IVWFDEMDNE VVEVDMQKRQ KSREAPTQHG  120
DDEAENLSGI STSQADAGNN KPYVNMEFES QEAAREFYDS YARQEGFSTH VGQYTRNKPD  180
GPIVSWEFFC SSEVFKRKNV ESCNAMLQIE RKDTGTWVVT KFVEDHNHSI VSPSKVHFLR  240
PRRHFAGATK NALPESADNQ NDVMVSVDGN HVLYDSNLVM RNTSPIEANP VAKNMSPAET  300
ISVGRTASCV ETSRATTSSV PVMPLQVAKY EHDHKAYIVI LDVSEMNASC SCQMFEYSGV  360
LCRHILTVFT VTNVLTVPSQ YILKRWTRDA RAGSLDEQDT GVSAESLTVR FNNLCREALK  420
FAEEGAIAVE TYNAAVDALQ EGVRKIALVK KFVAKNMPAT CQSSGNFQDN GSKKAFVTTP  480
DMIPSLWPWQ DALSNRFNLN DAGVPAADLS QPTLASLAIN RDGVLADNTV VLTCFKSMTW  540
VIENKSTASK VALINLKLQD YGKAPSGETE VQFRLTRTTL EPMLKSMAYI SQQLSAPANK  600
VAVINLKVLS SVYEIQFYLS EVLYEARVSF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011078717.1	1e-152	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_011078718.1	1e-152	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_011078719.1	1e-152	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_011078720.1	1e-152	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_011078721.1	1e-152	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_011078722.1	1e-152	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_020549440.1	1e-152	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_020549441.1	1e-152	protein FAR1-RELATED SEQUENCE 3 isoform X1
TrEMBL	A0A200Q080	1e-179	A0A200Q080_9MAGN; FAR1 DNA binding domain
STRING	Migut.N01873.1.p	1e-142	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	2e-81	FAR1-related sequence 3