PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00012644-RA_Salv
Common NameWRKY25
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 329aa    MW: 36268.7 Da    PI: 6.3209
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00012644-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1079.5e-34185242259
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            +Dgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers edp++v++tYeg+Hnh+
  SMil_00012644-RA_Salv 185 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCPVKKRVERSYEDPSIVITTYEGQHNHH 242
                            8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-35169244IPR003657WRKY domain
SuperFamilySSF1182904.32E-30176244IPR003657WRKY domain
PROSITE profilePS5081132.719179244IPR003657WRKY domain
SMARTSM007741.7E-39184243IPR003657WRKY domain
PfamPF031061.3E-26185242IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MSEDFTADFY YRHPFQDDQR RTTTTAAFTY SGSHSSAYAN DISSTFSADH SSVVDNNLQM  60
FDPTYASFAE FLHGSNDHTS FSAAFGLSPS SSVAVEDQHT PAVEAARGGG ETTPATPNSS  120
ISSSSAEAAA ADEDLNKGKK EAKETLEDAD GDSSKKDSKT KKKAEKKQRQ PRYAFMTKSE  180
VDHLEDGYRW RKYGQKAVKN SPYPRSYYRC TTQKCPVKKR VERSYEDPSI VITTYEGQHN  240
HHVPATLRGN AAAMFNPSML APPLNIPSEG QGFPQELLLQ MPHLYGGGGG GGASNMFHQQ  300
SFSNPQFHQF VDYGLLQDII PSVFPKEEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-29174245778Probable WRKY transcription factor 4
2lex_A2e-29174245778Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8231480.0KM823148.1 Salvia miltiorrhiza WRKY protein (WRKY25) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022879638.11e-122probable WRKY transcription factor 71
TrEMBLA0A0D5YA040.0A0A0D5YA04_SALMI; WRKY protein
STRINGVIT_10s0003g02810.t012e-95(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14852475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.11e-56WRKY DNA-binding protein 71