PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00012607-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 215aa MW: 24442.9 Da PI: 9.3112 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 199.1 | 1.9e-61 | 31 | 187 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesa 92 +eq+Cy+ CnfC+ ilavsvP + l+ vvtvrCGhC++l svn+a a + l +s ld ++ + e +v++ + ++ +++++ + SMil_00012607-RA_Salv 31 IVAEQMCYIPCNFCSIILAVSVPCKNLLDVVTVRCGHCANLWSVNMAAAFHSLHPSS-LDAQVGNYASSEYRVDGGSSSKWNHSHRIP 117 5789********************************************999998777.899999988888888877665544443333 PP YABBY 93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + s + p+++ v+rPPekrqrvPsayn+fikeeiqrika+nPdi+hreafs+aaknWahfP+ihfgl SMil_00012607-RA_Salv 118 IQPPSF---IT-----KPNQKIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGL 187 332222...22.....23333479****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.2E-67 | 33 | 187 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.75E-8 | 122 | 180 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.8E-4 | 134 | 181 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 215 aa Download sequence Send to blast |
LLCLITSSNI YILPSSRERK RDNILLTKME IVAEQMCYIP CNFCSIILAV SVPCKNLLDV 60 VTVRCGHCAN LWSVNMAAAF HSLHPSSLDA QVGNYASSEY RVDGGSSSKW NHSHRIPIQP 120 PSFITKPNQK IVNRPPEKRQ RVPSAYNQFI KEEIQRIKAN NPDITHREAF STAAKNWAHF 180 PHIHFGLMLE SNNEAKHDDQ NSDKHQMRRS AVLNK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011078402.1 | 3e-94 | axial regulator YABBY 5 | ||||
Swissprot | Q8GW46 | 2e-77 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A0X9PYC4 | 1e-100 | A0A0X9PYC4_MENSP; YABBY family protein 5 | ||||
STRING | Migut.K00443.1.p | 2e-88 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G26580.2 | 7e-80 | YABBY family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|