PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00012347-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

FAR1

Protein Properties

Length: 679aa MW: 78042 Da PI: 8.1069

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00012347-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.9	1.2e-21	62	155	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtklele 84 +fY+e+Ak++GFs+r+++++ + + t+r fvC + g++ +++++++k +r+r+++r+gC+a ++++k++ +w+vt + ++ SMil_00012347-RA_Salv 62 EFYSEFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPTKNSNDNKPQRNRKSSRCGCQAYMRISKSTelgVPEWRVTGFANH 149 6************9998877356667999*********99999******************99777789***** PP FAR1 85 HnHela 90 HnHel SMil_00012347-RA_Salv 150 HNHELL 155 **96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.8E-18	62	155	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-19	278	367	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.705	556	589	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.0E-7	559	587	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.2E-6	564	591	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence Send to blast
MSEEAGQMML VYEDPSDQRS ISLDDASSSE ESPDETRLSL ETTNDAIPYI GQRFVTHDAA 60 YEFYSEFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPTKNSND NKPQRNRKSS 120 RCGCQAYMRI SKSTELGVPE WRVTGFANHH NHELLEPNQV RFLPAYRTIS ESDKNRILMF 180 VKTGISVQQM MRLLELEKCI EPGYLPFTEK DVRNLLQSFR KVDPEDESID LLKMCRNIRD 240 KDPNFKFEFT LDSSGRLENI AWSYASSIQS YEIFGDAVVF DTTHRLTAFD MPLGIWVGMN 300 NYGMPCFFGC VLLREENLRS FSWALKAFLG FMNGKAPQTI LTDQNMCLKE AIGMEMPTTK 360 HALCIWLTVA KFPSWFNAVL GERYNEWKAE FYRLYNLETI EDFELGWRDM VNSFGLHTNR 420 HIASLYALRN LWALPYLRSH FFAGLTTPGQ SKSINAFIQR FLSAQSRLAH FVEQVAVAVD 480 FKDQAGEQQT MQQNIQNISL KTGAPMESHA ASVLTPFAFS KLQEQLVMAA HYASYQLEDG 540 FLVRHHTKLE GGRKVYWVPR EGIISCSCHQ FEFSGILCRH ALRVLSTGNC FQIPERYLPL 600 RWRRSMPLNR HLQAPRNDHA DRMQLLQSMV STLVTESAKS KERLDLATEH VSILLSRIRE 660 QPVSTMGMRE LSSSHRTLA

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence Send to blast

MSEEAGQMML VYEDPSDQRS ISLDDASSSE ESPDETRLSL ETTNDAIPYI GQRFVTHDAA  60
YEFYSEFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPTKNSND NKPQRNRKSS  120
RCGCQAYMRI SKSTELGVPE WRVTGFANHH NHELLEPNQV RFLPAYRTIS ESDKNRILMF  180
VKTGISVQQM MRLLELEKCI EPGYLPFTEK DVRNLLQSFR KVDPEDESID LLKMCRNIRD  240
KDPNFKFEFT LDSSGRLENI AWSYASSIQS YEIFGDAVVF DTTHRLTAFD MPLGIWVGMN  300
NYGMPCFFGC VLLREENLRS FSWALKAFLG FMNGKAPQTI LTDQNMCLKE AIGMEMPTTK  360
HALCIWLTVA KFPSWFNAVL GERYNEWKAE FYRLYNLETI EDFELGWRDM VNSFGLHTNR  420
HIASLYALRN LWALPYLRSH FFAGLTTPGQ SKSINAFIQR FLSAQSRLAH FVEQVAVAVD  480
FKDQAGEQQT MQQNIQNISL KTGAPMESHA ASVLTPFAFS KLQEQLVMAA HYASYQLEDG  540
FLVRHHTKLE GGRKVYWVPR EGIISCSCHQ FEFSGILCRH ALRVLSTGNC FQIPERYLPL  600
RWRRSMPLNR HLQAPRNDHA DRMQLLQSMV STLVTESAKS KERLDLATEH VSILLSRIRE  660
QPVSTMGMRE LSSSHRTLA

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087634.1	0.0	protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A4D9BZV1	0.0	A0A4D9BZV1_SALSN; Uncharacterized protein
STRING	EMJ26358	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10896	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]