PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00012162-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | FAR1 | ||||||||
Protein Properties | Length: 255aa MW: 29222.8 Da PI: 6.3205 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 92.6 | 5.1e-29 | 89 | 176 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+r+etr+gC+a++ v+k ++gkw vtk+++eH+H+l SMil_00012162-RA_Salv 89 FYNSYATRVGFVIRVSKLSRSRRDGTAIGRALVCNKEGFRMPDKRE--KIVRQRVETRVGCRAMILVRKVSSGKWTVTKFVKEHTHPL 174 ******************************************9988..9**************************************9 PP FAR1 90 ap 91 +p SMil_00012162-RA_Salv 175 TP 176 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.1E-26 | 89 | 176 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MDYEINGDVN GEVVGSSTNY EGRTDDDDTI VGSSADGVLQ HGLDIKVDED SSERDLFQLD 60 ELQDVNCVTP IDEPYVGQEF ESEAAAHAFY NSYATRVGFV IRVSKLSRSR RDGTAIGRAL 120 VCNKEGFRMP DKREKIVRQR VETRVGCRAM ILVRKVSSGK WTVTKFVKEH THPLTPGKGR 180 RDLIYDQYPN EHDKIRELSQ QLAIEKKKVA TYKRHLEMIF EHIEEHNQSL GKKIQNIMNS 240 VREMETKDQL DPRFC |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098324.1 | 1e-172 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2G9HZ25 | 1e-165 | A0A2G9HZ25_9LAMI; Uncharacterized protein | ||||
STRING | Migut.H01929.1.p | 1e-152 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11568 | 23 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 1e-101 | FAR1 family protein |