PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00012135-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 194aa    MW: 20992.4 Da    PI: 7.1631
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00012135-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.4e-202271255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           +y+GVr ++ +gr++AeIrdp   +k++r++lg+f+taeeAa a++aa++ ++g
  SMil_00012135-RA_Salv 22 HYRGVRKRP-WGRYAAEIRDP---NKKTRVWLGTFDTAEEAAHAYDAAARDFRG 71
                           6********.**********9...347**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.1822279IPR001471AP2/ERF domain
SMARTSM003802.0E-362285IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.7E-332278IPR001471AP2/ERF domain
CDDcd000181.84E-182278No hitNo description
PfamPF008472.2E-142271IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-222279IPR016177DNA-binding domain
PRINTSPR003672.6E-112334IPR001471AP2/ERF domain
PRINTSPR003672.6E-114561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MAMKEKPSGG ASAKAPAVNE VHYRGVRKRP WGRYAAEIRD PNKKTRVWLG TFDTAEEAAH  60
AYDAAARDFR GSKAKTNFLL PSDAACSPTA SSTVDSHGAD HAPVELDLTR RFGNAPTPAE  120
FRFLRQHPPV AVLPNGQQLF YIDRYMQHAV VAGAAPALQS DSDSASAVDE NQVDRGDVAR  180
ELNLDLNLAP PMPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-202280564ATERF1
3gcc_A1e-202280564ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. May regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:12654868, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemical transient expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Not influenced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100355.12e-57ethylene-responsive transcription factor 4-like
SwissprotQ404773e-56ERF4_TOBAC; Ethylene-responsive transcription factor 4
TrEMBLA0A2G9HCE27e-64A0A2G9HCE2_9LAMI; Uncharacterized protein
STRINGXP_009772525.12e-53(Nicotiana sylvestris)
STRINGXP_009595390.11e-53(Nicotiana tomentosiformis)
STRINGXP_009609806.11e-53(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.14e-32erf domain protein 9
Publications ? help Back to Top
  1. Ogata T, et al.
    Involvement of NtERF3 in the cell death signalling pathway mediated by SIPK/WIPK and WRKY1 in tobacco plants.
    Plant Biol (Stuttg), 2015. 17(5): p. 962-72
    [PMID:25996234]