PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00011986-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 177aa MW: 20430.8 Da PI: 5.0565 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.4 | 1.4e-19 | 8 | 61 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++f++eq+++Le Fe ++++ a++++e A++lgL+ rqV +WFqNrRa++k SMil_00011986-RA_Salv 8 DKRRFSDEQIRRLEVIFEAESKLEARKKAEVARELGLQPRQVAIWFQNRRARWK 61 6789*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 115.5 | 3.2e-37 | 9 | 99 | 3 | 93 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 krr+s+eq++ LE Fe+e+kLe ++K+e+areLglqprqva+WFqnrRAR+k+k++Ek+y+aL ++y+al++e ++L+ke+++L ++l+ SMil_00011986-RA_Salv 9 KRRFSDEQIRRLEVIFEAESKLEARKKAEVARELGLQPRQVAIWFQNRRARWKSKHIEKEYAALLANYNALAAEFDSLKKEKHSLLNQLE 98 9*************************************************************************************9998 PP HD-ZIP_I/II 93 e 93 + SMil_00011986-RA_Salv 99 K 99 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-18 | 3 | 68 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.767 | 3 | 63 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.6E-17 | 5 | 67 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.63E-17 | 5 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.79E-15 | 6 | 64 | No hit | No description |
Pfam | PF00046 | 6.6E-17 | 8 | 61 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 1.7E-6 | 34 | 43 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 38 | 61 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.7E-6 | 43 | 59 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.1E-13 | 63 | 103 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009615 | Biological Process | response to virus | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MKKMSRSDKR RFSDEQIRRL EVIFEAESKL EARKKAEVAR ELGLQPRQVA IWFQNRRARW 60 KSKHIEKEYA ALLANYNALA AEFDSLKKEK HSLLNQLEKL KGKGDDDEEG GSGARCGGES 120 ESVKTNDFEV KNEGMVSVSD EEEMLRMVET TSDWGGLDCD DIIIDQSSSY QWWGFWS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:11374882, ECO:0000269|PubMed:15604708}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00013 | PBM | Transfer from AT3G61890 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA), by cold and salt stress. {ECO:0000269|PubMed:15369784, ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:9617808}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093009.1 | 1e-52 | homeobox-leucine zipper protein ATHB-12 | ||||
Swissprot | Q9M276 | 5e-41 | ATB12_ARATH; Homeobox-leucine zipper protein ATHB-12 | ||||
TrEMBL | A0A4D8YKX2 | 8e-67 | A0A4D8YKX2_SALSN; Homeobox-leucine zipper protein | ||||
STRING | XP_010054131.1 | 4e-49 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2041 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.2 | 2e-32 | homeobox 7 |
Publications ? help Back to Top | |||
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