PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00011767-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

MYB_related

Protein Properties

Length: 334aa MW: 37691.8 Da PI: 9.8296

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00011767-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.3	5.7e-11	88	144	1	47
TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...........tWktIartmgkgRtlkqcksrwqky 47 r +WT+ E+e++++a ++ +Wk+I + +g +t q++s+ qk+ SMil_00011767-RA_Salv 88 RENWTEMEHEKFLEALHLRSLTqiyfppsrfdrDWKKIEAFVG-SKTVIQIRSHAQKH 144 789**************999*****************.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.26E-11	82	150	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-9	86	147	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	2.4E-4	86	150	IPR009057	Homeodomain-like
SMART	SM00717	5.9E-6	87	147	IPR001005	SANT/Myb domain
Pfam	PF00249	9.0E-8	88	144	IPR001005	SANT/Myb domain
CDD	cd00167	2.89E-6	90	145	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
LCIRILSNFF SFFYSFESLS FYSRSYMVSV HPNPHPGQGF THLYNFHLGG DPMKAAENNT 60 ASYWSAAAAA VDEPGKKVRK PYTITKSREN WTEMEHEKFL EALHLRSLTQ IYFPPSRFDR 120 DWKKIEAFVG SKTVIQIRSH AQKHFMKVQK NGTSEHVPPP RPKRKAAHPY PHKAPKKVAS 180 QTSEPLSSAA LLDSKYAVGP QSVSVPRNII SSKSLYHWTP TVPTGCASPM SSDDFTLSGA 240 DMNWSSNSDD IALHRWTSNE TNSQVKEKVI GKRAALPDFA QVYRFIGRLF DPSARCHLTE 300 LKKMDPINIE TVLMLMSNLS ANLVSPEFEN HVSS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093084.1	1e-110	protein REVEILLE 6 isoform X1
Swissprot	Q6R0H0	3e-77	RVE3_ARATH; Protein REVEILLE 3
TrEMBL	A0A4D9AX47	0.0	A0A4D9AX47_SALSN; Uncharacterized protein
STRING	XP_009617756.1	2e-96	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA998	24	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01520.1	2e-65	MYB_related family protein

Publications ? help Back to Top
Manfield IW, et al. Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9 [PMID:16845059] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761] Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615]