PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00011705-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C3H

Protein Properties

Length: 285aa MW: 31400 Da PI: 8.4344

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00011705-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.4	2e-12	196	221	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ SMil_00011705-RA_Salv 196 YQPDICKDYKETGYCGYGDSCKFMHD 221 67789********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	1.57E-9	194	226	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.878	195	223	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1E-7	195	222	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.4E-12	196	226	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.7E-10	196	221	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MAGEEADGGS AGAATGEGSN VCSFFRKPSK GKNIRKRTAV EEAEGEDEDS NSGSSVVYNK 60 KKQAAADNKL LFSSGSLKTS KGSEPEKQKD SVFEYESSRV IQVQNDSKAT ATLETETDFS 120 RDARAIRERV LKQAEAALKG KNKSSGDEKL YKGLHGYTDY KAGFRREQTV ASEKAGGAHG 180 PLRASAHIRV SARFDYQPDI CKDYKETGYC GYGDSCKFMH DRGDYKSGWQ LEKEWDEKEK 240 ARTRKMAMGM KGGEDDESPA RVTRTMIMLC HLLASFVGSL LWMLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5z56_M	9e-39	20	237	13	238	RING finger protein 113A
5z58_M	9e-39	20	237	13	238	RING finger protein 113A
6ff4_t	9e-39	20	237	13	238	RING finger protein 113A
6ff7_t	9e-39	20	237	13	238	RING finger protein 113A
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012843831.1	1e-140	PREDICTED: zinc finger CCCH domain-containing protein 1
Swissprot	Q8GX84	1e-117	C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBL	A0A4D9AER5	1e-170	A0A4D9AER5_SALSN; RING finger protein 113A
STRING	Migut.B01852.1.p	1e-139	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4403	23	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	1e-111	C3H family protein