PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00011310-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

VOZ

Protein Properties

Length: 510aa MW: 56726.7 Da PI: 5.297

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00011310-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	413.6	3.7e-127	231	449	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlq...dycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaat 85 pppsaflgpkcalwdctrpa g+ w+q dycs +ha la eg +g pv+rp+gi+lkd+llfaal ak+qgk+vgipecegaat SMil_00011310-RA_Salv 231 PPPSAFLGPKCALWDCTRPA-GVRWCQksdDYCSIYHAGLAPSEGYLGRPPVVRPRGIGLKDNLLFAALGAKAQGKDVGIPECEGAAT 317 89***************8.5666643449***************************************************** PP VOZ 86 akspwnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeye 173 +kspwna+elfdl++l+getirewlffdkprrafesgnrkqrslpdy+grgwhesrkqvm+efgglkrsyymdpqp+++fewhlyeye SMil_00011310-RA_Salv 318 TKSPWNAPELFDLTVLDGETIREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQVMNEFGGLKRSYYMDPQPMENFEWHLYEYE 405 ************************************************************************************ PP VOZ 174 ineldalalyrlelklvdekksakgkvskdsladlqkklgrlta 217 in++da+alyrle+k vd+kks+kgk+ +ds+adlqk++grl+a SMil_00011310-RA_Salv 406 INKYDACALYRLEVKRVDGKKSPKGKLGNDSVADLQKQMGRLSA 449 ****************************************97 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009408	Biological Process	response to heat
GO:0009414	Biological Process	response to water deprivation
GO:0009631	Biological Process	cold acclimation
GO:0009816	Biological Process	defense response to bacterium, incompatible interaction
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048578	Biological Process	positive regulation of long-day photoperiodism, flowering
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence Send to blast
MALYTFCSDL LVSSSELLVK FSGVTWMGKG SKSGACKSSS HQLFKDRAKN RVDDLQGVFS 60 DLQSARKESR SIDVAVLEEQ VHQMLREWKS ELNEPSPASS LQQGGSLGFS SEICRLLQLC 120 EEEDDATSAL AAPKPDPDAQ KVVGGYTSQE NFDAPKGPQD QGFQLVEQCK NAAMGVNMEM 180 NNMNVPAQLD YHSFDFHQDF EQPYLIGFDG TGFIGEDVMP QMSGYQPNIS PPPSAFLGPK 240 CALWDCTRPA GVRWCQKSDD YCSIYHAGLA PSEGYLGRPP VVRPRGIGLK DNLLFAALGA 300 KAQGKDVGIP ECEGAATTKS PWNAPELFDL TVLDGETIRE WLFFDKPRRA FESGNRKQRS 360 LPDYNGRGWH ESRKQVMNEF GGLKRSYYMD PQPMENFEWH LYEYEINKYD ACALYRLEVK 420 RVDGKKSPKG KLGNDSVADL QKQMGRLSAE FPNEKQRVVK GRGKSNLKEG SGRIYSGSNT 480 LAASPGEGLD YTRGAPYDYL VEDINGYYIT

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence Send to blast

MALYTFCSDL LVSSSELLVK FSGVTWMGKG SKSGACKSSS HQLFKDRAKN RVDDLQGVFS  60
DLQSARKESR SIDVAVLEEQ VHQMLREWKS ELNEPSPASS LQQGGSLGFS SEICRLLQLC  120
EEEDDATSAL AAPKPDPDAQ KVVGGYTSQE NFDAPKGPQD QGFQLVEQCK NAAMGVNMEM  180
NNMNVPAQLD YHSFDFHQDF EQPYLIGFDG TGFIGEDVMP QMSGYQPNIS PPPSAFLGPK  240
CALWDCTRPA GVRWCQKSDD YCSIYHAGLA PSEGYLGRPP VVRPRGIGLK DNLLFAALGA  300
KAQGKDVGIP ECEGAATTKS PWNAPELFDL TVLDGETIRE WLFFDKPRRA FESGNRKQRS  360
LPDYNGRGWH ESRKQVMNEF GGLKRSYYMD PQPMENFEWH LYEYEINKYD ACALYRLEVK  420
RVDGKKSPKG KLGNDSVADL QKQMGRLSAE FPNEKQRVVK GRGKSNLKEG SGRIYSGSNT  480
LAASPGEGLD YTRGAPYDYL VEDINGYYIT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096373.2	0.0	transcription factor VOZ1, partial
Swissprot	Q9SGQ0	0.0	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A4D8ZHY0	0.0	A0A4D8ZHY0_SALSN; Uncharacterized protein
STRING	Migut.M01093.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2818	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	0.0	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]