PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00010717-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

G2-like

Protein Properties

Length: 275aa MW: 30382.5 Da PI: 9.67

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00010717-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.5	5.5e-32	97	150	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ SMil_00010717-RA_Salv 97 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 150 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.36E-15	94	151	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.0E-28	95	151	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-23	97	150	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-7	98	149	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0080060	Biological Process	integument development
GO:0005618	Cellular Component	cell wall
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MYLSSNTPDL SLQISPPSAT QTPRDRSSTA DSASSGGSDL SHENGIFNNQ VVEPTLRLGF 60 DVPRHYQPQM YGGREFKRSS RATINGGVSV RRSVRAPRMR WTTTLHAHFV HAVQLLGGHE 120 RATPKSVLEL MNVKDLTLAH VKSHLQMYRT VKSTDKGTDI GPKLHTTRIE DEKDEDPCTV 180 IAPLVAAPPP PPLSLSLLHI QHAQRRPLSI DDLILRPSSH LHAPKPNLPQ LDISKEYGVG 240 GVSKSSSSDV LVDLEFKLGR SIWQMDRSES SLLRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-17	98	152	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-17	98	152	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-17	98	152	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-17	98	152	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-17	98	152	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-17	98	152	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-17	98	152	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-17	98	152	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-17	98	152	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-17	98	152	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-17	98	152	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-17	98	152	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:19054366, ECO:0000269\|PubMed:20444210}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00107	PBM	Transfer from AT5G42630	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011083778.1	9e-83	probable transcription factor KAN4
Swissprot	Q9FJV5	2e-56	KAN4_ARATH; Probable transcription factor KAN4
TrEMBL	A0A2G9HEY3	6e-84	A0A2G9HEY3_9LAMI; Uncharacterized protein
STRING	cassava4.1_011255m	3e-64	(Manihot esculenta)
STRING	PGSC0003DMT400030518	2e-64	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12262	18	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.2	8e-56	G2-like family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Gomez MD,Ventimilla D,Sacristan R,Perez-Amador MA Gibberellins Regulate Ovule Integument Development by Interfering with the Transcription Factor ATS. Plant Physiol., 2016. 172(4): p. 2403-2415 [PMID:27794102]