PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00010583-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

SAP

Protein Properties

Length: 463aa MW: 50207 Da PI: 7.6108

Description

SAP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00010583-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SAP	71.9	9.3e-23	2	70	2	80
SAP 2 ssssssssseseegseggeggdassgesegpsssrqraanevwpePflealatqvaidasrslGrlaaasalanvfqvc 80 s+ssss ++++g+ ++ge ++s+sr r++n+vwpePfleala +va+dasr +Grlaaa+al n+fq++ SMil_00010583-RA_Salv 2 STSSSS----------TSTQGGDGGGEPPSSSRSRLRSSNGVWPEPFLEALALHVAVDASRAIGRLAAAQALSNIFQIS 70 444443..........33344444567778999999*****************************************97 PP
2	SAP	488.9	3e-149	164	463	151	455
SAP 151 lsCrclalsdkylaaGfadGavrlfdletrlhvstflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrall 238 +lalsd++laaGf+dGav+lf++ +rlh+stf+pqhrdrlGrfs+avsGiv+sd+rlvfatldGdih+a++++ aa+ rra+l SMil_00010583-RA_Salv 164 PQVPRLALSDHHLAAGFSDGAVHLFHIPSRLHLSTFYPQHRDRLGRFSSAVSGIVLSDARLVFATLDGDIHMAAVNA--AAPLRRAHL 249 45568*********************************************************************9..78*** PP SAP 239 GdvvndGalvdfaGsgrWwvGlyaGvpGrafhiWdaeteelvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvv 326 GdvvndGalvdfaG++rWwvGlyaGvp rafhiW++eteelvfvGG ltdPeavmGWh+ltelt ++Gr+rvt+ ++avaCt +r+vv SMil_00010583-RA_Salv 250 GDVVNDGALVDFAGCNRWWVGLYAGVPRRAFHIWNGETEELVFVGGVLTDPEAVMGWHLLTELTGIIGRIRVTSGDMAVACTGVRVVV 337 ************************************************************************************ PP SAP 327 fdlrnqgvvlreeeerrGlivssldasneayvvvdsrGvatvrrvenleevcrfrvrgaqrgvlgCvnggyalvyaggvlrvWeiekk 414 f+l qgvv++eee+ rG++v+++da+ ++++v d rGvatvrrv n+eevcrf++r ++ +gC+nggy+++++ggv+rvWei++ SMil_00010583-RA_Salv 338 FHLLRQGVVVGEEEFPRGIVVGAFDAYGDSALVPDARGVATVRRVGNMEEVCRFTMR--EGVAFGCMNGGYGVTWGGGVIRVWEIHHG 423 *****************************************************..6789*******************96 PP SAP 415 egylyslrervgevnalvaddrhvavsssdgtihlldfgaq 455 + ylys+rer+ge+nal+ad+r+va++ +d+tihl+dfgaq SMil_00010583-RA_Salv 424 Q-YLYSFRERIGECNALIADERFVAACCDDATIHLWDFGAQ 463 6.***********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF50978	4.67E-13	165	233	IPR017986	WD40-repeat-containing domain
Gene3D	G3DSA:2.130.10.10	2.3E-10	172	251	IPR015943	WD40/YVTN repeat-like-containing domain
SuperFamily	SSF50978	4.67E-13	281	460	IPR017986	WD40-repeat-containing domain
Gene3D	G3DSA:2.130.10.10	2.3E-10	411	460	IPR015943	WD40/YVTN repeat-like-containing domain
PROSITE pattern	PS00678	0	446	460	IPR019775	WD40 repeat, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MSTSSSSTST QGGDGGGEPP SSSRSRLRSS NGVWPEPFLE ALALHVAVDA SRAIGRLAAA 60 QALSNIFQIS DSCGIELKLS AVFDVVCIYT SLCARRGEPY RGPIFCGETS REESGTFASS 120 STAIVAGGVR LPPPHRRQFP VAPVRPHHPP LRPHRQQQQR RRRPQVPRLA LSDHHLAAGF 180 SDGAVHLFHI PSRLHLSTFY PQHRDRLGRF SSAVSGIVLS DARLVFATLD GDIHMAAVNA 240 AAPLRRAHLG DVVNDGALVD FAGCNRWWVG LYAGVPRRAF HIWNGETEEL VFVGGVLTDP 300 EAVMGWHLLT ELTGIIGRIR VTSGDMAVAC TGVRVVVFHL LRQGVVVGEE EFPRGIVVGA 360 FDAYGDSALV PDARGVATVR RVGNMEEVCR FTMREGVAFG CMNGGYGVTW GGGVIRVWEI 420 HHGQYLYSFR ERIGECNALI ADERFVAACC DDATIHLWDF GAQ

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MSTSSSSTST QGGDGGGEPP SSSRSRLRSS NGVWPEPFLE ALALHVAVDA SRAIGRLAAA  60
QALSNIFQIS DSCGIELKLS AVFDVVCIYT SLCARRGEPY RGPIFCGETS REESGTFASS  120
STAIVAGGVR LPPPHRRQFP VAPVRPHHPP LRPHRQQQQR RRRPQVPRLA LSDHHLAAGF  180
SDGAVHLFHI PSRLHLSTFY PQHRDRLGRF SSAVSGIVLS DARLVFATLD GDIHMAAVNA  240
AAPLRRAHLG DVVNDGALVD FAGCNRWWVG LYAGVPRRAF HIWNGETEEL VFVGGVLTDP  300
EAVMGWHLLT ELTGIIGRIR VTSGDMAVAC TGVRVVVFHL LRQGVVVGEE EFPRGIVVGA  360
FDAYGDSALV PDARGVATVR RVGNMEEVCR FTMREGVAFG CMNGGYGVTW GGGVIRVWEI  420
HHGQYLYSFR ERIGECNALI ADERFVAACC DDATIHLWDF GAQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022889432.1	1e-167	transcriptional regulator STERILE APETALA
Swissprot	Q9FKH1	1e-109	SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBL	A0A4D9B667	0.0	A0A4D9B667_SALSN; Uncharacterized protein
STRING	XP_009596786.1	1e-166	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4099	23	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35770.1	1e-104	SAP family protein

Publications ? help Back to Top
Li N, et al. STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana. PLoS Genet., 2018. 14(2): p. e1007218 [PMID:29401459]