PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00010480-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

FAR1

Protein Properties

Length: 428aa MW: 48982.9 Da PI: 4.6796

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00010480-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	39.8	1.5e-12	168	230	1	68
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkv 68 ++Yn YAke+GF +r+++s k+++++e + ++C++eg+++ ++ ++r+etrtgC a+++ SMil_00010480-RA_Salv 168 NYYNCYAKELGFGIRVKSSWKKRNSKEKRGAVLCCNCEGFKTMKEAC-----TRRKETRTGCLAMIRD 230 69**************************************98776.....8999*******975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.5E-10	168	232	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MADAAVFSPA GDGLSSNSGI EITVDETSEN SEELLDEGVE GFKIEAPDLR TEDSKILKLK 60 SNDLENAIQQ VLGIGRADLE NDGKQVLGIH NVDLQDESEN VLEFERNGHE SNREKMLEIR 120 SNDRDSSSDQ MLGITGNEAG AQNDHTLGKS YLPPVEGMEF ESYDDAYNYY NCYAKELGFG 180 IRVKSSWKKR NSKEKRGAVL CCNCEGFKTM KEACTRRKET RTGCLAMIRD HEWLNSLYEE 240 RERWAPVYLK NSIFAGIFTY QPGEYANPFF HGYLDDQMTW TEFFKVYELL QQKMIQREAL 300 DDVESREFRP VLRTRCSYET QVSELYTKEI FLKFQEEVAL MPGCFSVTRV HVNGPIITCM 360 VKERDDGGDA REARNFEVVY DKIGMEHLYR RAMQVVAEGM ASQDHHMVAW QAFKESLNKV 420 RLAAEKPV

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MADAAVFSPA GDGLSSNSGI EITVDETSEN SEELLDEGVE GFKIEAPDLR TEDSKILKLK  60
SNDLENAIQQ VLGIGRADLE NDGKQVLGIH NVDLQDESEN VLEFERNGHE SNREKMLEIR  120
SNDRDSSSDQ MLGITGNEAG AQNDHTLGKS YLPPVEGMEF ESYDDAYNYY NCYAKELGFG  180
IRVKSSWKKR NSKEKRGAVL CCNCEGFKTM KEACTRRKET RTGCLAMIRD HEWLNSLYEE  240
RERWAPVYLK NSIFAGIFTY QPGEYANPFF HGYLDDQMTW TEFFKVYELL QQKMIQREAL  300
DDVESREFRP VLRTRCSYET QVSELYTKEI FLKFQEEVAL MPGCFSVTRV HVNGPIITCM  360
VKERDDGGDA REARNFEVVY DKIGMEHLYR RAMQVVAEGM ASQDHHMVAW QAFKESLNKV  420
RLAAEKPV

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073396.1	1e-101	protein FAR1-RELATED SEQUENCE 8 isoform X1
Swissprot	Q9SSQ4	1e-40	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A4D8YX90	1e-123	A0A4D8YX90_SALSN; Zinc finger SWIM domain-containing protein 3
STRING	Migut.I00749.1.p	2e-68	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	7e-43	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]