PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00010326-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

TCP

Protein Properties

Length: 413aa MW: 44200.8 Da PI: 8.1091

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00010326-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	127.6	1.3e-39	110	216	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg. 88 ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLl qa+pai+++tgt++++a+++ ++s +ss+ + s++ SMil_00010326-RA_Salv 110 VAKKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLHQAEPAIIAATGTGTIPANFStLNVSLRSSGTTISAPp 197 6899****************************************************************99987777777777444445 PP TCP 89 ..................k 89 + SMil_00010326-RA_Salv 198 sksaplflgggagmlgfhH 216 5455566666666666541 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.954	115	169	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.6E-37	115	222	IPR005333	Transcription factor, TCP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MEFMETHTKN QGANSNPNPD RHREPPSSLQ LVSPHHLHLH HHLQSQTEPG SGSGPAPPHG 60 PLMGSISLQQ PRNLAHSPSS SSATTTAIVA TANNSNSDEN NNNTSATNKV AKKPSKDRHT 120 KVDGRGRRIR MPALCAARVF QLTRELGHKS DGETIEWLLH QAEPAIIAAT GTGTIPANFS 180 TLNVSLRSSG TTISAPPSKS APLFLGGGAG MLGFHHQLTS NSHFGQDPDE NYLKKRFRED 240 TSGATSPKPA RTSVHDQEPG PEHKPGSSQP SSYIPAPAMW AVAPAAANVG NAFWMLPVTG 300 SAATTAAGQP EWQYKTSSAQ RIGGFEFPGA GRFSPVQLGS MVLQQPQPQP PVHQLGLGVT 360 ETNMGMLASM NAYNNNNNNN NHNRIDLGMN LEHHHHHQPQ QSDSGDETPK DSQ

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MEFMETHTKN QGANSNPNPD RHREPPSSLQ LVSPHHLHLH HHLQSQTEPG SGSGPAPPHG  60
PLMGSISLQQ PRNLAHSPSS SSATTTAIVA TANNSNSDEN NNNTSATNKV AKKPSKDRHT  120
KVDGRGRRIR MPALCAARVF QLTRELGHKS DGETIEWLLH QAEPAIIAAT GTGTIPANFS  180
TLNVSLRSSG TTISAPPSKS APLFLGGGAG MLGFHHQLTS NSHFGQDPDE NYLKKRFRED  240
TSGATSPKPA RTSVHDQEPG PEHKPGSSQP SSYIPAPAMW AVAPAAANVG NAFWMLPVTG  300
SAATTAAGQP EWQYKTSSAQ RIGGFEFPGA GRFSPVQLGS MVLQQPQPQP PVHQLGLGVT  360
ETNMGMLASM NAYNNNNNNN NHNRIDLGMN LEHHHHHQPQ QSDSGDETPK DSQ

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096575.1	0.0	LOW QUALITY PROTEIN: transcription factor TCP23
Swissprot	Q9C518	3e-70	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A2Z7BFH2	0.0	A0A2Z7BFH2_9LAMI; TCP transcription factor 12
STRING	Migut.C01285.1.p	1e-178	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35560.1	2e-61	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]