PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00009929-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

GRF

Protein Properties

Length: 372aa MW: 41144 Da PI: 8.9992

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00009929-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.6	1.3e-24	180	224	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e SMil_00009929-RA_Salv 180 DPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEG 224 79****************************************986 PP
2	QLQ	61.3	2.6e-21	116	152	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ an+P+P++Ll +i+k SMil_00009929-RA_Salv 116 GPFTPSQWMELEHQALIYKYITANVPIPSYLLNPIRK 152 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.0E-11	116	152	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.1E-15	117	151	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.988	117	152	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.847	180	224	IPR014977	WRC domain
Pfam	PF08879	6.4E-21	181	223	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MDFALLASDT NLLQNANADA DKQKCYGYGF LKQDRAINEE DFREFKMAKT SSCGEGVLRY 60 PPHRSNGCSL SSPQAHHQML SFSSPNSQPY YHYSSNAFAR INAGINGGMQ QQGVRGPFTP 120 SQWMELEHQA LIYKYITANV PIPSYLLNPI RKAFEAAGFS ALRSNPLGWS GFHLGFSNTD 180 PEPGRCRRTD GKKWRCSRDA VVDQKYCERH MNRGRHRSRK PVEGQSGHAA ATKSVVELSK 240 IKPKDGGVRE WERHEFGLVC SDSLVNPLNK KAVRQFMEPE SRDTQLSISI STSTSATSTS 300 NWVPISWEPT SMGGPLGEAL HSNVQLNLMD RWDSSPRLDS SPTGVLQRGP FASLSNSSAA 360 GSPPHDPSLP PL

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MDFALLASDT NLLQNANADA DKQKCYGYGF LKQDRAINEE DFREFKMAKT SSCGEGVLRY  60
PPHRSNGCSL SSPQAHHQML SFSSPNSQPY YHYSSNAFAR INAGINGGMQ QQGVRGPFTP  120
SQWMELEHQA LIYKYITANV PIPSYLLNPI RKAFEAAGFS ALRSNPLGWS GFHLGFSNTD  180
PEPGRCRRTD GKKWRCSRDA VVDQKYCERH MNRGRHRSRK PVEGQSGHAA ATKSVVELSK  240
IKPKDGGVRE WERHEFGLVC SDSLVNPLNK KAVRQFMEPE SRDTQLSISI STSTSATSTS  300
NWVPISWEPT SMGGPLGEAL HSNVQLNLMD RWDSSPRLDS SPTGVLQRGP FASLSNSSAA  360
GSPPHDPSLP PL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011074333.2	1e-110	growth-regulating factor 6
TrEMBL	A0A4D8Z435	0.0	A0A4D8Z435_SALSN; Uncharacterized protein
STRING	VIT_18s0001g08650.t01	2e-84	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1688	23	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	1e-54	growth-regulating factor 2