PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00009557-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

TCP

Protein Properties

Length: 193aa MW: 20872.9 Da PI: 11.7024

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00009557-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	101.4	1.5e-31	38	119	11	95
TCP 11 ihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaa 95 +hTkv+gR+RRvR++a+ aar+F+L++eLG+ +d++tieWLl+ a+p+i+++tgt++ +a+++ ssss a +s ++a +++ SMil_00009557-RA_Salv 38 RHTKVNGRGRRVRIPALSAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGTGTVPAESV---SSSSRALPPSRPSATVQSP 119 9******************************************************99999555...3333333333333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	23.711	35	89	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.2E-25	38	106	IPR005333	Transcription factor, TCP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MCTTPTAPLP RLPPPRRIPP LTIREARRRR RPDLGEGRHT KVNGRGRRVR IPALSAARIF 60 QLTRELGHRS DGETIEWLLR HAEPSIIAAT GTGTVPAESV SSSSRALPPS RPSATVQSPL 120 SSSLQQVTVA APPAPETACR LNLFQSAAPP QAMALEFPMN GYRHMPFMAL LLQPTTAAAD 180 DVDGYRGLAG DNH

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	3e-45	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077331.1	6e-67	transcription factor TCP11
Swissprot	Q9SJK7	8e-37	TCP11_ARATH; Transcription factor TCP11
TrEMBL	A0A4D9A9Z1	2e-68	A0A4D9A9Z1_SALSN; Uncharacterized protein
STRING	GLYMA13G20710.2	3e-50	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	6e-36	TCP family protein