PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00009454-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | B3 | ||||||||
Protein Properties | Length: 118aa MW: 13748.8 Da PI: 9.0506 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.8 | 8.2e-13 | 19 | 101 | 10 | 95 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 ++ ++r++lp + + ++k+e+s +l++++g +Wevk+ r+ +++ ++l++GW eF++ n ++ Df+ F+++ + + f+ +v SMil_00009454-RA_Salv 19 AGFKKRVMLPLVYYN--KLKEEKSEWAILKTPKG-EWEVKV--RRDDNGdIFLEDGWPEFARGNAFNDHDFMEFEHTCNkMHFNVNVA 101 444567999999985..55566776778777777.7*****..66666669************************9988888866665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.798 | 10 | 104 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-11 | 14 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.4E-9 | 18 | 101 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.34E-10 | 18 | 100 | No hit | No description |
SuperFamily | SSF101936 | 3.34E-11 | 19 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MAKDEVAATS KMGKMMVSAG FKKRVMLPLV YYNKLKEEKS EWAILKTPKG EWEVKVRRDD 60 NGDIFLEDGW PEFARGNAFN DHDFMEFEHT CNKMHFNVNV AAKSKHLQRS YLFIATLN |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8536 | 16 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34400.1 | 3e-09 | B3 family protein |