PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009441-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 487aa    MW: 53483.9 Da    PI: 8.5863
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009441-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.83.5e-31218273359
                            -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            Dg+nWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkver+  d+k+ ei+Y+geHnh 
  SMil_00009441-RA_Salv 218 DGHNWRKYGQKQVKGSEYPRSYYKCTYPNCPVKKKVERTV-DGKIAEIVYKGEHNHL 273
                            9***************************************.***************5 PP
2WRKY96.91.3e-30413470259
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             Dg++WrKYGqK+vkg+ +prsYYrCt ++C+v+k ver++edp ++++tYeg+Hnh 
  SMil_00009441-RA_Salv 413 GDGFRWRKYGQKVVKGKMYPRSYYRCTNPDCNVRKYVERTSEDPGTFITTYEGKHNHA 470
                            59*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-28206275IPR003657WRKY domain
SuperFamilySSF1182908.5E-25214275IPR003657WRKY domain
SMARTSM007745.1E-35216274IPR003657WRKY domain
PfamPF031061.8E-24218272IPR003657WRKY domain
PROSITE profilePS5081122.928218275IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-31398472IPR003657WRKY domain
SuperFamilySSF1182901.57E-27406472IPR003657WRKY domain
PROSITE profilePS5081131.192407472IPR003657WRKY domain
SMARTSM007749.0E-35412471IPR003657WRKY domain
PfamPF031062.0E-24414469IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MELHNLLLIS SDEDIIFAIP LMTLFFQETI AVATVMMEIK EKEKIVIAKP VACRPHFSNL  60
KSLSDLLSAA TDASPPAAFT ETAGTVIRPT TVRFKPDSAI DLVGVDRVAE AAASHPTKRA  120
LESNVACNVV YKPIAKLVSR TTVSQLSNLK GNSISPTQEV ADRIQSSNQV TQQSGATLEV  180
HPDFPTQSEQ RATTPVENHA DETKSSIPAN IRDRPSYDGH NWRKYGQKQV KGSEYPRSYY  240
KCTYPNCPVK KKVERTVDGK IAEIVYKGEH NHLKPQPPNH TPSDGHVQKP AYDATRKELQ  300
SHLINQQAEA VKAHQGRSEN QDLTASSNQS TFSCIPPINY TVASAACNAG PSVSNNSLGE  360
CEEVGGFVEA EGGDFRNKRT RSNNQLPRAS MAGEASSDPQ IVVQNHTDSG IIGDGFRWRK  420
YGQKVVKGKM YPRSYYRCTN PDCNVRKYVE RTSEDPGTFI TTYEGKHNHA MPIKGANAEA  480
AKASTKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-26218472877Probable WRKY transcription factor 4
2lex_A2e-26218472877Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8231780.0KM823178.1 Salvia miltiorrhiza WRKY protein (WRKY55) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094753.10.0WRKY transcription factor 44-like
RefseqXP_011094754.10.0WRKY transcription factor 44-like
RefseqXP_020553423.10.0WRKY transcription factor 44-like
RefseqXP_020553424.10.0WRKY transcription factor 44-like
TrEMBLA0A0D5YA250.0A0A0D5YA25_SALMI; WRKY protein
STRINGVIT_08s0040g03070.t011e-144(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99512227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.14e-78WRKY family protein