PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009239-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C3H
Protein Properties Length: 746aa    MW: 81190.8 Da    PI: 6.4638
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009239-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.4e-07324344526
                            --SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                            +C++f++ G C++Gd C +aHg
  SMil_00009239-RA_Salv 324 PCPDFRK-GACRRGDMCEYAHG 344
                            8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.02E-1652180IPR020683Ankyrin repeat-containing domain
CDDcd002046.02E-1453179No hitNo description
Gene3DG3DSA:1.25.40.203.4E-1784181IPR020683Ankyrin repeat-containing domain
PfamPF127966.2E-1196170IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.114101181IPR020683Ankyrin repeat-containing domain
SMARTSM002480.31101131IPR002110Ankyrin repeat
PRINTSPR014151.1E-5102117IPR002110Ankyrin repeat
SMARTSM002483.1E-5136168IPR002110Ankyrin repeat
PROSITE profilePS5008812.609136171IPR002110Ankyrin repeat
PRINTSPR014151.1E-5155169IPR002110Ankyrin repeat
SMARTSM003564.0E-6319345IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-4323346IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-5324344IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582324346IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4352382IPR000571Zinc finger, CCCH-type
SMARTSM0035664354377IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
LRISTPIYRT DWVKLGYVQW AGHSTSNCSA SPSSSVIKSQ NMKGMGQLSV ETEDSFSSLL  60
EYAANNDVEA FRRTIELDLS AVDEAGPWYV RKKGGKQIAQ EERTPLMVAA TYGSVDVLKL  120
IVALPEVDLN RLCGPDKWTA LHCAASGGSV NAFDVVKLLL SAGADPNIED ACGQRPVDLI  180
VVPRGNPSAK AALEDLFMNS YSDGFVGDNS VQVSVTASNA SSPVLSSSPD SPCSPSDSAS  240
SPTALKLSDI PSNSVSEKKQ YPVDPSLPDI RNSIYSTDEF RMYSFKVRPC SRAYSHDWTE  300
CPFVHPGENA RRRDPRKYHY SCVPCPDFRK GACRRGDMCE YAHGVFECWL HPAQYRTRLC  360
KDGTSCARQV CFFAHTQEEL RPLYVSTGSG VPSPRSAASA ASFMDMATAL SILPGSPTSH  420
SVMSPPAFNH VLSPTANGMP HNSAAWPQPN VPTLHLPGSN FQSSRLRSSL SARDIPPDLN  480
MLRDFDAQQQ ALNDMASFSQ SHPNSSMLNR SGRSKSSLTP SNLEELFSAE FSSSPRYADQ  540
AVASGVFSPT HKSAVLNQFQ QPQSLLSPIN TNMFSPRNVE HHFLQASFGV SSPRMSPRSL  600
ETASPLSNRL SAFAQREKQQ QQQMLHNLGS RELVPNHAPP VGSPVGSWAK WGSPVEKVDW  660
SVGPDDQAFL RRSSAEPKND GEEPDVTWVQ SLVKESPPEM MEKPAASTSG AAPSGECLKT  720
NPQVDSTDHS VIGTWLEQMQ LDQLVA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087691.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2G9IBP40.0A0A2G9IBP4_9LAMI; CCCH-type Zn-finger protein
STRINGXP_009799603.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]