PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008992-RA_Salv
Common NameMYB36
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 152aa    MW: 17254.6 Da    PI: 7.4158
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008992-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12e-18956148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+W+ +Ed  l+++v+++G+++Wk++a + g++R++k+c++rw++yl
  SMil_00008992-RA_Salv  9 KGAWSVDEDTTLAQYVALHGPKRWKSVAIKSGLNRCGKSCRLRWLNYL 56
                           79********************************************97 PP
2Myb_DNA-binding28.92.6e-0975982347
                           -HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                           +W++Ia++++ gRt++++k++w+ +
  SMil_00008992-RA_Salv 75 RWSLIAKRIP-GRTDNEIKNYWNAH 98
                           5*********.***********977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.011460IPR017930Myb domain
SMARTSM007172.6E-14858IPR001005SANT/Myb domain
SuperFamilySSF466894.49E-249100IPR009057Homeodomain-like
PfamPF002492.2E-17956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-221063IPR009057Homeodomain-like
CDDcd001676.55E-101156No hitNo description
SMARTSM007172.2E-561101IPR001005SANT/Myb domain
PROSITE profilePS5129411.47761103IPR017930Myb domain
CDDcd001672.75E-76499No hitNo description
Gene3DG3DSA:1.10.10.604.7E-1664102IPR009057Homeodomain-like
PfamPF002493.1E-77599IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MASDASLNKG AWSVDEDTTL AQYVALHGPK RWKSVAIKSG LNRCGKSCRL RWLNYLRPDI  60
KRGNFSDAEE DLILRWSLIA KRIPGRTDNE IKNYWNAHLR KKAMLMDKLP AISTAAMKQN  120
IWNETGGDDE SLDVSASGLD WVKSFLELDE DE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-25410322128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Regulates the epidermal cell fate specification. Mediates the formation of columellae and accumulation of mucilages on seed coats. Controls the elongation of epidermal cells positively in roots but negatively in stems, leading to the promotion of primary roots elongation and repression of leaves and stems elongation, respectively. Ovoids ectopic root-hair formation, probably by inducing GL2 in roots. Controls trichome initiation and branching. {ECO:0000269|PubMed:11437443, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15668208, ECO:0000269|PubMed:15728674}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0595001e-127KF059500.1 Salvia miltiorrhiza MYB-related transcription factor (MYB36) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081404.21e-69transcription factor WER-like
SwissprotQ962761e-43MYB23_ARATH; Transcription factor MYB23
TrEMBLA0A059PRJ21e-103A0A059PRJ2_SALMI; MYB-related transcription factor
STRINGMigut.A01129.1.p1e-58(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40330.15e-46myb domain protein 23
Publications ? help Back to Top
  1. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]
  2. Khosla A, et al.
    HD-Zip Proteins GL2 and HDG11 Have Redundant Functions in Arabidopsis Trichomes, and GL2 Activates a Positive Feedback Loop via MYB23.
    Plant Cell, 2014. 26(5): p. 2184-2200
    [PMID:24824485]
  3. Yu D, et al.
    RPN1a, a subunit of the 26S proteasome, controls trichome development in Arabidopsis.
    Plant Physiol. Biochem., 2015. 88: p. 82-8
    [PMID:25676129]
  4. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]
  5. Kohanová J, et al.
    Root hair abundance impacts cadmium accumulation in Arabidopsis thaliana shoots.
    Ann. Bot., 2018. 122(5): p. 903-914
    [PMID:29394308]