PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008708-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HD-ZIP
Protein Properties Length: 195aa    MW: 23182 Da    PI: 8.5451
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008708-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.3e-194292656
                           S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                           +f+++q++ Le+ Fe+++++  +++ e+A+ l+L  rqV +WFqN+Ra++k
  SMil_00008708-RA_Salv 42 RFSEDQIKSLESIFEQESKLEPKKKLEIARDLSLHPRQVAIWFQNKRARWK 92
                           8*************************************************9 PP
2HD-ZIP_I/II115.92.4e-3741130493
            HD-ZIP_I/II   4 rrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                            rr+s++q+k+LE+ Fe+e+kLep++K e+ar+L l+prqva+WFqn+RAR+k+k++E+++ +Lk++ydal+ + ++L++e+++L+ +l
  SMil_00008708-RA_Salv  41 RRFSEDQIKSLESIFEQESKLEPKKKLEIARDLSLHPRQVAIWFQNKRARWKSKRIEQEFIHLKSTYDALSISFDALKREKHSLQMQL 128
                            9*************************************************************************************99 PP

            HD-ZIP_I/II  92 ke 93 
                            +e
  SMil_00008708-RA_Salv 129 QE 130
                            87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.47E-171694IPR009057Homeodomain-like
PROSITE profilePS5007115.8073494IPR001356Homeobox domain
SMARTSM003892.4E-153798IPR001356Homeobox domain
CDDcd000862.49E-124195No hitNo description
PfamPF000461.6E-164292IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.5E-184292IPR009057Homeodomain-like
PROSITE patternPS0002706992IPR017970Homeobox, conserved site
PfamPF021832.2E-1194135IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
LQLHIIILSH SSSPNMMASS PQKTPPKNKT KTHHHHHHHP RRFSEDQIKS LESIFEQESK  60
LEPKKKLEIA RDLSLHPRQV AIWFQNKRAR WKSKRIEQEF IHLKSTYDAL SISFDALKRE  120
KHSLQMQLQE LNDRLKNRGD RINDDDEDER IITSCFDGQE FLKRGEEVMS QTWRNLSDSG  180
VLFHDSSENP NWWET
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075911.11e-46homeobox-leucine zipper protein ATHB-12-like isoform X2
SwissprotP468971e-35ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A4D9BJL26e-67A0A4D9BJL2_SALSN; Homeobox-leucine zipper protein
STRINGXP_004502719.12e-38(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20412363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.17e-35homeobox 12
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]