PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00008689-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

FAR1

Protein Properties

Length: 348aa MW: 40555.3 Da PI: 8.5143

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00008689-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.5	4e-22	59	142	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 ++Yn YA+e+GF+vr+++s +++++e + + ++Cs +g+++ ++ + + r+etrtgC a++++++ ++++w+v ++ leHnH SMil_00008689-RA_Salv 59 NYYNCYATEAGFNVRVKNSWFKRNSREKYGAVLCCSSQGFKRVKDVN-----HLRKETRTGCPAMMRMRLVDSKRWRVLEVTLEHNHL 141 69**************************************99988.....999******************************8 PP FAR1 89 l 89 l SMil_00008689-RA_Salv 142 L 142 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.1E-19	59	142	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.656	234	270	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.0E-4	244	266	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	245	272	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MSVEEMSLHT ERTTEEVSCA TLLTNGQNGI LEDNTCEGRK EFVAPAMGME FESYDDAYNY 60 YNCYATEAGF NVRVKNSWFK RNSREKYGAV LCCSSQGFKR VKDVNHLRKE TRTGCPAMMR 120 MRLVDSKRWR VLEVTLEHNH LLGAKIHKSN KKVGSGTKRK LLSNSDTEIQ PIKLYRALLS 180 KVYTRAIFKR FQLEVEEMYS CFSTTQIHVE GPITIFSVKE RVLHEGNRRE IKDFEVLYNR 240 GASEVRCICS CFNFYGYLCR HALCVLNFNG VEEIPSKYIL LRWKKDYKRF YLHDRGAESS 300 DSSERVQWFN QLYRSALQVV EEGVISLDHY KIALRALEES LDRVHSIE

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MSVEEMSLHT ERTTEEVSCA TLLTNGQNGI LEDNTCEGRK EFVAPAMGME FESYDDAYNY  60
YNCYATEAGF NVRVKNSWFK RNSREKYGAV LCCSSQGFKR VKDVNHLRKE TRTGCPAMMR  120
MRLVDSKRWR VLEVTLEHNH LLGAKIHKSN KKVGSGTKRK LLSNSDTEIQ PIKLYRALLS  180
KVYTRAIFKR FQLEVEEMYS CFSTTQIHVE GPITIFSVKE RVLHEGNRRE IKDFEVLYNR  240
GASEVRCICS CFNFYGYLCR HALCVLNFNG VEEIPSKYIL LRWKKDYKRF YLHDRGAESS  300
DSSERVQWFN QLYRSALQVV EEGVISLDHY KIALRALEES LDRVHSIE

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073400.1	1e-102	protein FAR1-RELATED SEQUENCE 6 isoform X2
Refseq	XP_011073401.1	1e-102	protein FAR1-RELATED SEQUENCE 6 isoform X2
Refseq	XP_011073403.1	1e-102	protein FAR1-RELATED SEQUENCE 6 isoform X2
Swissprot	Q9SSQ4	2e-84	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A0A0K8R3	1e-167	A0A0A0K8R3_CUCSA; Uncharacterized protein
STRING	VIT_09s0002g07400.t01	3e-94	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	5e-87	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]