PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00008646-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | G2-like | ||||||||
Protein Properties | Length: 350aa MW: 39394.4 Da PI: 5.9263 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88.7 | 5.3e-28 | 142 | 196 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH++Fv+aveqL G++kA+P++ile+m++++Lt+++v+SHLQkYR++ SMil_00008646-RA_Salv 142 KSKVDWTPELHRQFVQAVEQL-GIDKAVPSRILEIMGIDCLTRHNVASHLQKYRSH 196 6799*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.975 | 139 | 198 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.93E-19 | 140 | 199 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-27 | 140 | 199 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-26 | 142 | 196 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.8E-7 | 145 | 194 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MLAVSPLSSV KHEREKEMLQ VFSMEEREFE DVVGGENLLG SIDFDDILVG IGNGDVLPDL 60 EIDHEFFAEF SGSESDTKIE CDNNSRNSEE DAAADSVSNV DLESPDTIQE PEAEVKNPDL 120 KEADDRNKTS SAGCKNPPGK KKSKVDWTPE LHRQFVQAVE QLGIDKAVPS RILEIMGIDC 180 LTRHNVASHL QKYRSHRKHV QAREAEAVSW GRRRQMYGKA AIQGAVNPWI APTMGFPPAT 240 PPVPHFRPLH VWGHPSVDQS LMYTWHKHLS PPLHAWLPPP SDPSFWHPHH QYVTPQGTMY 300 FPPPQFPPTV ITELSLLRFL ISNQRFPPPA AAQTVPKLPS DIHPVIFRYL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 4e-16 | 139 | 200 | 2 | 63 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that functions with GLK2 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:17533111, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:17533111, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022877229.1 | 1e-110 | probable transcription factor GLK1 isoform X2 | ||||
Swissprot | Q9SIV3 | 2e-65 | GLK1_ARATH; Transcription activator GLK1 | ||||
TrEMBL | A0A4D8YIT2 | 1e-131 | A0A4D8YIT2_SALSN; Uncharacterized protein | ||||
STRING | XP_009601765.1 | 1e-99 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2532 | 23 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 8e-68 | GBF's pro-rich region-interacting factor 1 |