PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00008466-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | C3H | ||||||||
Protein Properties | Length: 354aa MW: 38652.7 Da PI: 6.7659 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.9 | 1.1e-10 | 109 | 133 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC+ f++ GtC+y +C+FaH+ SMil_00008466-RA_Salv 109 YKTKLCCKFRA-GTCPYVTNCNFAHS 133 9**********.*************8 PP | |||||||
2 | zf-CCCH | 17.4 | 8e-06 | 180 | 205 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yG++C+F H+ SMil_00008466-RA_Salv 180 YKGRHCKKFYTEEGCPYGENCTFLHD 205 78888********************7 PP | |||||||
3 | zf-CCCH | 42.3 | 1.3e-13 | 241 | 266 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg SMil_00008466-RA_Salv 241 WKTRICNKWELTGYCPFGSKCHFAHG 266 8************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 2.35E-8 | 105 | 139 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.3E-15 | 106 | 141 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.526 | 108 | 135 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0011 | 108 | 134 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.7E-8 | 109 | 133 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.2E-9 | 177 | 207 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-7 | 178 | 207 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.986 | 179 | 207 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.17 | 179 | 206 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.6E-17 | 237 | 270 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.85E-10 | 237 | 271 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.422 | 240 | 268 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.2E-9 | 240 | 267 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.5E-11 | 241 | 266 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
LLLLLEMDFR RDNAFSNANV VQILSGSSGN CGSENWGPGS SDQAIWATED DYGMWSGEAS 60 GDANSNSNYE GTGSQSRSGS EPPSKRSKSS QSGDLVSSNR SKAIGKMFYK TKLCCKFRAG 120 TCPYVTNCNF AHSIEELRKP PPNWQEIMAA HEEDRPVSSE PREEFQIPIV GVTDETQRSY 180 KGRHCKKFYT EEGCPYGENC TFLHDEQSKS RESVAISLGP GSGGQSYGNS AIAVTLKPSN 240 WKTRICNKWE LTGYCPFGSK CHFAHGAAEL HNYGGLDSEG KDCSTPDAKQ APAKTSLDSI 300 LASVASAPYS DGYHLGVPAQ RLSNVVQKTG HRPTQKWKGP DKISKIYGDW IDDL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011092357.1 | 0.0 | zinc finger CCCH domain-containing protein 12 isoform X2 | ||||
Swissprot | Q84UQ3 | 1e-118 | C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56 | ||||
TrEMBL | A0A2G9G2L7 | 0.0 | A0A2G9G2L7_9LAMI; CCCH-type Zn-finger protein | ||||
STRING | Migut.N01445.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3729 | 23 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-120 | C3H family protein |