PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008313-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bZIP
Protein Properties Length: 617aa    MW: 65400 Da    PI: 4.7533
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008313-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_174.51.5e-23263325163
                            XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                            e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ +v++L +eN++L++el++l++e++kl+se+
  SMil_00008313-RA_Salv 263 ERELKRQKRKQSNRESARRSRLRKQAECEELQHRVETLNSENRSLRDELQRLSEECEKLTSEN 325
                            89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.4E-32196IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165965.3E-8119230No hitNo description
Gene3DG3DSA:1.20.5.1709.2E-20258322No hitNo description
PfamPF001709.3E-21263325IPR004827Basic-leucine zipper domain
SMARTSM003381.3E-22263327IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.587265328IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.55E-11266322No hitNo description
CDDcd147021.33E-24268318No hitNo description
PROSITE patternPS000360270285IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010629Biological Processnegative regulation of gene expression
GO:0090342Biological Processregulation of cell aging
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MGAGEESTPS KSSKPASSAQ EAPVTPTTPV YPDWSSSMQA FYGAGAAPPF FASTVASPTP  60
HPYMWGGQHP MMPPYGTPVP YPALYPPGGI YAHPNMAAPP GFVHGTAESD GKVTDGKDRP  120
SSKKSKGASA NHGMIGGKTG EGGKTASGSG NDGTHSAESG SEGSSDGSDE NNQDFSTSKK  180
GSFDQMLAEG ANAQNNGVPT NFPNSVPGNP VVSVPATNLN IGMDLWNTTP TGSGPMKLRP  240
NSVGVAQTVA PSGMMNDQWI QDERELKRQK RKQSNRESAR RSRLRKQAEC EELQHRVETL  300
NSENRSLRDE LQRLSEECEK LTSENNSIKE ELTKMLGADA VSKLENGKSD THECGGDEAN  360
TPPETRRTDS APPAASPPPP EPPSRPSPPP RRLHPLEDLG VEHERLDLPH PIPGAGAVEV  420
GGLQGLQERG VELEAVDHGL AVRRRAEAHL ALGVHVHHHV RREPAQVVEE GRPHVAEYRR  480
REKHGQLLPL YELDGLEGQV LKGADQDEID LEADVEFPGE VGEVVPDEGG LGGVVLRHER  540
RYPEGGVAGV GVVGEVPEEG GPVAAEGDVE VDDVEEHGAV EGVEQGLVGG EAGEHGDGRY  600
AGEGLVALMV WMISCGW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279285RRSRLRK
2279286RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00039PBMTransfer from AT4G36730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097214.10.0G-box-binding factor 1-like isoform X1
SwissprotP427741e-104GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A4D9BV770.0A0A4D9BV77_SALSN; Plant G-box-binding factor
STRINGMigut.H00187.1.p1e-166(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37802446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.22e-72G-box binding factor 1
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  4. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  5. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  6. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]