PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00008227-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

WRKY

Protein Properties

Length: 155aa MW: 17037.9 Da PI: 10.6469

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00008227-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	74.9	1e-23	14	66	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+++ gC + k+vers ++ Y++eH+h+ SMil_00008227-RA_Salv 14 ADSWAWRKYGQKPIKGSPYPRNYYRCSTSkGCAASKQVERSP------KVSYSSEHTHP 66 69**********************9988********......89******7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-24	3	68	IPR003657	WRKY domain
SuperFamily	SSF118290	5.89E-22	6	68	IPR003657	WRKY domain
PROSITE profile	PS50811	25.626	8	68	IPR003657	WRKY domain
SMART	SM00774	9.2E-26	13	67	IPR003657	WRKY domain
Pfam	PF03106	2.1E-20	15	66	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MKMVRQMTQE ELSADSWAWR KYGQKPIKGS PYPRNYYRCS TSKGCAASKQ VERSPKVSYS 60 SEHTHPRPTH QSSLAGSTRS KLASPPPKGG INSAVLSQKG SMASSSSLPA TGASFSPDTP 120 TIDAEAAVQN DDVQDGRGGR RRRRRGRREY NHDPE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	4e-17	15	69	18	80	Disease resistance protein RRS1
5w3x_D	4e-17	15	69	18	80	Disease resistance protein RRS1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	144	RGGRRRRRR
2	139	146	RRRRRRGR
3	139	147	RRRRRRGRR
4	140	147	RRRRRGRR
5	141	148	RRRRGRRE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM823141	1e-136	KM823141.1 Salvia miltiorrhiza WRKY protein (WRKY18) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020548861.1	6e-51	probable WRKY transcription factor 27 isoform X1
Swissprot	Q9FLX8	3e-36	WRK27_ARATH; Probable WRKY transcription factor 27
TrEMBL	A0A0D5Y990	1e-71	A0A0D5Y990_SALMI; WRKY protein
STRING	Migut.F00276.1.p	3e-46	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13860	10	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	3e-38	WRKY DNA-binding protein 27

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Mukhtar MS,Liu X,Somssich IE Elucidating the role of WRKY27 in male sterility in Arabidopsis. Plant Signal Behav, 2017. 12(9): p. e1363945 [PMID:28816593]