PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008183-RA_Salv
Common NameMYB4
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 412aa    MW: 44858 Da    PI: 7.7734
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008183-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-172774148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g W++eEde+l++ ++++G g+W+++++  g+ R++k+c++rw +yl
  SMil_00008183-RA_Salv 27 KGLWSPEEDEKLIKHITKFGHGCWSSVPKLAGLQRCGKSCRLRWINYL 74
                           678*******************************************97 PP
2Myb_DNA-binding45.81.4e-1480122145
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                            rg +++eE+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w+
  SMil_00008183-RA_Salv  80 RGTFSQEEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWN 122
                            899*******************.*********.*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-271977IPR009057Homeodomain-like
PROSITE profilePS5129424.9692278IPR017930Myb domain
SuperFamilySSF466892.58E-2925121IPR009057Homeodomain-like
SMARTSM007174.9E-132676IPR001005SANT/Myb domain
PfamPF002493.3E-152774IPR001005SANT/Myb domain
CDDcd001679.09E-123074No hitNo description
Gene3DG3DSA:1.10.10.603.6E-2578129IPR009057Homeodomain-like
PROSITE profilePS5129420.21379129IPR017930Myb domain
SMARTSM007173.4E-1379127IPR001005SANT/Myb domain
PfamPF002492.0E-1380122IPR001005SANT/Myb domain
CDDcd001678.38E-1082122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
LSFTQHCRVL TLQMGRHSCC YKQKLRKGLW SPEEDEKLIK HITKFGHGCW SSVPKLAGLQ  60
RCGKSCRLRW INYLRPDLKR GTFSQEEENL IIELHAVLGN RWSQIAAQLP GRTDNEIKNL  120
WNSSIKKKLR QRGIDPSTHK PLSELDGEDK ASAASSSKNG DKNSEGGSSE LSFADNAADK  180
PRLDYPMMDG AASNSTQHEF FLNRLVASSH ESSASAAASC KPSDLTGFLS FQQLNYGGGG  240
PNIGLSMNPN AGLFFNSSSK PSENIISDHF GATNVAAPPL LPAANRISNN NNNSVSPFSV  300
KFENWDGGGA GRGGGDCGFF ENNAFAWAAA ECGKSEKEAA HGMPEEIKWS EYMQTPFLLG  360
NSIHNPGAAQ DLYASPAKMP AQFAAEGWQQ QQVAAAEMYS KHFQAAAFGQ YS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30251295108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0593580.0KF059358.1 Salvia miltiorrhiza MYB-related transcription factor (MYB4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087570.11e-178transcription factor MYB86
TrEMBLA0A059PRD80.0A0A059PRD8_SALMI; MYB-related transcription factor
STRINGXP_009628184.11e-149(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.16e-93myb domain protein 61
Publications ? help Back to Top
  1. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]