PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008151-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HD-ZIP
Protein Properties Length: 239aa    MW: 26504.4 Da    PI: 9.4346
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008151-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.23.4e-193891356
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                           k+++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  SMil_00008151-RA_Salv 38 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 91
                           566899***********************************************9 PP
2HD-ZIP_I/II129.41.4e-4137129193
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                            ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++yd lk + erL++++e+L 
  SMil_00008151-RA_Salv  37 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYSGLKASYDGLKLNFERLQRDNESLL 124
                            69************************************************************************************** PP

            HD-ZIP_I/II  89 eelke 93 
                            +e++e
  SMil_00008151-RA_Salv 125 KEIRE 129
                            99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.11E-192395IPR009057Homeodomain-like
PROSITE profilePS5007117.3293393IPR001356Homeobox domain
SMARTSM003896.3E-183697IPR001356Homeobox domain
CDDcd000862.69E-163894No hitNo description
PfamPF000462.2E-163891IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.7E-2040100IPR009057Homeodomain-like
PRINTSPR000315.7E-66473IPR000047Helix-turn-helix motif
PROSITE patternPS0002706891IPR017970Homeobox, conserved site
PRINTSPR000315.7E-67389IPR000047Helix-turn-helix motif
PfamPF021833.9E-1693134IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MSXPRLKNIA LPRHCSPSAD AAAPKSTRAA VQPHVSEKKR RLSVDQVKAL EKNFEVENKL  60
EPERKVKLAQ ELGLQPRQVA VWFQNRRARW KTKQLERDYS GLKASYDGLK LNFERLQRDN  120
ESLLKEIREL KSKLNGDDEE KTRLESEIGD AVLRRAGAAE ERGRGRGLPR AEGEHKLADV  180
DVGEVEEEDV HVRAGEIQAR DGAGRYQAEA GQAGGEAHCP GEGRALAARA RAGKGSDAD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18593RRARWKTKQ
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27182453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.12e-52homeobox protein 16