PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008026-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HSF
Protein Properties Length: 486aa    MW: 54197 Da    PI: 4.7373
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008026-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.21.5e-34961882103
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl+k++++++d++l+++i w + g sfvv+d+ efa+ +Lp+ Fkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g
  SMil_00008026-RA_Salv  96 FLSKTFDLVDDPSLDKIIAWGAGGGSFVVWDPVEFARAILPRNFKHNNFSSFVRQLNTYGFRKIDADK---------WEFANEGFIRG 174
                            9****************************************************************999.........*********** PP

                            XXXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkkse 103
                            +++ll++i+r+ks+
  SMil_00008026-RA_Salv 175 QRHLLKNIQRRKSS 188
                            ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467857.07E-3592185IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.7E-5892185IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.4E-3693185IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.4E-1796119IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.6E-3096185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-17134146IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340135159IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-17147159IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MELMQPEPSP SYSPLPCFTS GGEPAVLVPS PITPPSFPFP TASPFLEPPP FSPFSIFESF  60
ETQFESKPDL GNELGESLVS APQPLETLYE TPIPPFLSKT FDLVDDPSLD KIIAWGAGGG  120
SFVVWDPVEF ARAILPRNFK HNNFSSFVRQ LNTYGFRKID ADKWEFANEG FIRGQRHLLK  180
NIQRRKSSHP QHIGISSGFP DEAGKADLGG EIEHLRKERK LLMQEVVELQ HQQRGTVKHM  240
EIVNEKLQTA EKRQKQMVSF LGKIFQNPAF LTRFQQMRQQ KSITSPRTMR KFVKHQVHES  300
GTSDSSPKEQ IVGDELGDPF TPKQLPSPPL QDMVGNVPFE IEDNSLSECP MMNELLSGPE  360
PSEAVLKGKG VVPGPEYFIS FPEDFVKEKT TPEFSISETQ TMAVAEDGLW SIGLGASAGM  420
SSSTELWGNV SSYDVPEISD VWNIGSLQRA GSSGIEKWLN QDSPFSEIDK QEGQQHRDDS  480
SNKLDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-259318817123Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101504.10.0heat stress transcription factor A-3-like
TrEMBLA0A4D8YP320.0A0A4D8YP32_SALSN; Heat shock transcription factor, other eukaryote
STRINGEMJ040671e-139(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87272025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.19e-96heat shock transcription factor A3