PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00007812-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C3H
Protein Properties Length: 381aa    MW: 42257.1 Da    PI: 8.0396
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00007812-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.2e-085776525
                           --SGGGGTS--TTTTT-SS-S CS
                zf-CCCH  5 lCrffartGtCkyGdrCkFaH 25
                           +C f+++ G C yG rC++ H
  SMil_00007812-RA_Salv 57 ICTFYQK-GVCAYGTRCRYDH 76
                           7******.************* PP
2zf-CCCH18.73e-06160182326
                            S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                            +++C+ fa+ G+C++G +C++ Hg
  SMil_00007812-RA_Salv 160 QPICS-FAAAGECPHGMSCPRVHG 182
                            68899.*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0012650IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-72749IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0282951IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6765279IPR000571Zinc finger, CCCH-type
SMARTSM003560.00425378IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-55576IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-55776IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-45776IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.967157184IPR000571Zinc finger, CCCH-type
SMARTSM003560.25158183IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.71E-13215290No hitNo description
Gene3DG3DSA:3.30.40.101.0E-10221285IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001622.40E-4225285No hitNo description
PROSITE profilePS5008912.622226284IPR001841Zinc finger, RING-type
PfamPF000973.6E-7226283IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001846.7E-8226283IPR001841Zinc finger, RING-type
PROSITE patternPS005180250259IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.507313342IPR000571Zinc finger, CCCH-type
SMARTSM003560.15313341IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MGSRLLLAFL GLAISSLFSK KLVALSWVLC KFFAHGACLK GEHCEYSHDW KAPPNNICTF  60
YQKGVCAYGT RCRYDHIKVS RLQSPALSSS ANLSSTKELS TGAATLGSSA AAGVSVEHSA  120
SNLPVHPPST PAWGENSGNC DTIQGDDDLA DFRDVDPADQ PICSFAAAGE CPHGMSCPRV  180
HGDLCPTCRK HCLHPFRPQE REEHMNTCEK RQKHLEALAH SQEIECSVCL EKILSKPTAA  240
ERKFGILSEC DHPFCISCIR NWRSTSRASG MDANSALRSC PICRKLSYFV IPSVIWYSSK  300
DDKQEIVDSY KSKLRSIDCK HFDFGNGTCP FGTSCFYKHA YRDGRLEEVV LRHLGAEDGN  360
TVIAKNVRWR RNGMNFPKIH F
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012844691.10.0PREDICTED: E3 ubiquitin-protein ligase makorin, partial
SwissprotQ5ZA071e-157C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA0A4D8Y9T10.0A0A4D8Y9T1_SALSN; E3 ubiquitin-protein ligase makorin
STRINGMigut.N01471.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33862149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-144C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]