PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00007574-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

G2-like

Protein Properties

Length: 530aa MW: 58741.5 Da PI: 5.6906

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00007574-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.2	6.9e-32	300	354	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe F eav++LGG e+AtPk +l+lm+v+gLt++hvkSHLQkYR+ SMil_00007574-RA_Salv 300 KERMRWTPELHEVFTEAVNKLGGGERATPKGVLKLMNVEGLTIYHVKSHLQKYRT 354 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.979	297	357	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.3E-30	299	357	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.47E-17	299	355	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-24	300	354	IPR006447	Myb domain, plants
Pfam	PF00249	6.3E-10	302	353	IPR001005	SANT/Myb domain
Pfam	PF14379	1.2E-21	385	432	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence Send to blast
MTRNSSHPSL ELDSLLKPLL EAKLSADLLI GESLQLSSVH GYLNMAPALF KKKSSETRSN 60 EVQASGALSR SLHILPSLSE EKYPKLPDSP QVTLVHELTT NLLSTDTRTA GHLFSSASVS 120 LGHSSLSPDL SRLKIPPFIS EPLNDKGSFH SSQSSPTVTG ASQSERKSVS WTTDASDVPP 180 HHNQVENDRD VVSSEDSAKR TDWREWADQL VTVDDTLDLN LSDLLVDVNV PDLDAKFELI 240 YGNSLTKRVE LELDTTQLLL ELPPDFSTYQ PQVHQHRLLS VSTGQTLSAV TSPCASSATK 300 ERMRWTPELH EVFTEAVNKL GGGERATPKG VLKLMNVEGL TIYHVKSHLQ KYRTARHKPE 360 SSEGTSEKKS RNVAETASLD LKTAMGITEA LRLQMEVQKQ LHDQLEIQRN LQFRIEEQGK 420 HLQMMFEQQR KMEEGKQRGS SSNRDDNFPS PTIETQPCVG KTEAESPDHD QSSAKEIPPL 480 EHADEEEELS ERRTCKDHEA NAGGGCSPPT KRAKTDETVN SPKKSVDLTI

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence Send to blast

MTRNSSHPSL ELDSLLKPLL EAKLSADLLI GESLQLSSVH GYLNMAPALF KKKSSETRSN  60
EVQASGALSR SLHILPSLSE EKYPKLPDSP QVTLVHELTT NLLSTDTRTA GHLFSSASVS  120
LGHSSLSPDL SRLKIPPFIS EPLNDKGSFH SSQSSPTVTG ASQSERKSVS WTTDASDVPP  180
HHNQVENDRD VVSSEDSAKR TDWREWADQL VTVDDTLDLN LSDLLVDVNV PDLDAKFELI  240
YGNSLTKRVE LELDTTQLLL ELPPDFSTYQ PQVHQHRLLS VSTGQTLSAV TSPCASSATK  300
ERMRWTPELH EVFTEAVNKL GGGERATPKG VLKLMNVEGL TIYHVKSHLQ KYRTARHKPE  360
SSEGTSEKKS RNVAETASLD LKTAMGITEA LRLQMEVQKQ LHDQLEIQRN LQFRIEEQGK  420
HLQMMFEQQR KMEEGKQRGS SSNRDDNFPS PTIETQPCVG KTEAESPDHD QSSAKEIPPL  480
EHADEEEELS ERRTCKDHEA NAGGGCSPPT KRAKTDETVN SPKKSVDLTI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-28	300	358	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-28	300	358	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-28	300	358	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-28	300	358	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-28	300	358	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-28	300	358	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-28	300	358	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-28	300	358	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011102186.1	0.0	protein PHOSPHATE STARVATION RESPONSE 1 isoform X2
TrEMBL	A0A4D8Z518	0.0	A0A4D8Z518_SALSN; Uncharacterized protein
STRING	cassava4.1_007430m	1e-115	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4582	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04450.2	1e-66	G2-like family protein