PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00007568-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | TCP | ||||||||
Protein Properties | Length: 124aa MW: 14474.4 Da PI: 8.1989 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 75.4 | 1.6e-23 | 2 | 94 | 15 | 98 |
TCP 15 vggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssaseceaesssssasnsssgkaaksaa 95 +g dRR+Rls+++ +fF Lqd+LG+dk k i WL+ ++k+ ikel+++ s++ ++c a+++ ++s+ ++ a+++aa SMil_00007568-RA_Salv 2 QGVQDRRMRLSLQVENKFFNLQDMLGYDKVRKMIKWLFSKSKKDIKELAKNvvsgikenySNNEVNKCLAAEEDGNESSLVEKYAREQAA 91 7999***********************************************999888665444446773333333333222222222222 PP TCP 96 ksk 98 +++ SMil_00007568-RA_Salv 92 ETS 94 111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 21.334 | 1 | 49 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 4.5E-21 | 2 | 97 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MQGVQDRRMR LSLQVENKFF NLQDMLGYDK VRKMIKWLFS KSKKDIKELA KNVVSGIKEN 60 YSNNEVNKCL AAEEDGNESS LVEKYAREQA AETSLQTKHE RVEGEGEGRG MIDVEQRIRR 120 WETC |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071262.2 | 3e-19 | transcription factor TCP12 | ||||
TrEMBL | Q6Y9Y6 | 5e-21 | Q6Y9Y6_PLAMJ; TCP protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2436 | 23 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 2e-19 | TCP domain protein 12 |