PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00007515-RA_Salv
Common NameWRKY18
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 333aa    MW: 36600 Da    PI: 4.5472
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00007515-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.7e-30138196259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                             D ++WrKYGqK++kgs++pr+YYrC+++ gC ++k+vers +dp+++++ Y+geH+h+
  SMil_00007515-RA_Salv 138 ADSWAWRKYGQKPIKGSPYPRNYYRCSTSkGCAARKQVERSPNDPEIFVVSYSGEHTHP 196
                            69************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-31123198IPR003657WRKY domain
SuperFamilySSF1182909.55E-27130198IPR003657WRKY domain
PROSITE profilePS5081132.925132198IPR003657WRKY domain
SMARTSM007744.9E-36137197IPR003657WRKY domain
PfamPF031065.9E-26139196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MRSLMDDDWD LHAVVRGCAA NTAAADNPFP SNLPFHDDQN SFDFSVDDRN DHFQGLQEIY  60
QEFCGPPTAA LQPQHQEELM QIKPALRLNM QIQENVQFNI GSSPQNFPSA IPQPVRPRRR  120
KNQQMKMVRQ MTQEELSADS WAWRKYGQKP IKGSPYPRNY YRCSTSKGCA ARKQVERSPN  180
DPEIFVVSYS GEHTHPRPTH RSSLAGSTRS KLASPPPKGG INSAVLSQKG SMASSSSSPA  240
TGASFSPDTP SIEAEAAAQN DDVQMAEEDD GAGDEDDENI IMIPSDLMND DDDMFRGFQD  300
SEDHSSGGGG DFFSMSSPPW TSTSSPGTFN GGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-181381991780Disease resistance protein RRS1
5w3x_D4e-181381991780Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116120PRRRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8231410.0KM823141.1 Salvia miltiorrhiza WRKY protein (WRKY18) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020548861.11e-131probable WRKY transcription factor 27 isoform X1
TrEMBLA0A0D5Y9900.0A0A0D5Y990_SALMI; WRKY protein
STRINGMigut.F00276.1.p1e-104(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA138601014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.11e-49WRKY DNA-binding protein 27