PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00007459-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 352aa    MW: 39765.8 Da    PI: 10.0394
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00007459-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.91.9e-071144438
                           S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
        Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                           W t+Ed++l  av ++G+g+W+ +a+++   Rtl+
  SMil_00007459-RA_Salv 11 WGTWEDLILGGAVVRHGTGDWNVVASELR-ARTLY 44
                           *****************************.88876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.87E-51062IPR009057Homeodomain-like
PROSITE profilePS500906.0981161IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.5E-51159IPR009057Homeodomain-like
PfamPF002491.5E-51158IPR001005SANT/Myb domain
CDDcd001670.001051157No hitNo description
SMARTSM002975.2E-1872336IPR001487Bromodomain
PROSITE profilePS5001410.636247317IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.1E-14247335IPR001487Bromodomain
SuperFamilySSF473703.27E-16247334IPR001487Bromodomain
PfamPF004392.4E-10248320IPR001487Bromodomain
CDDcd043691.50E-7252327No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGAEAEAAAV WGTWEDLILG GAVVRHGTGD WNVVASELRA RTLYPYAFTA QACKERYEDL  60
QKCYSGSTAW FEELRKRRMA ELKRELVKSE NSIGSLESKI KSLEGKKQRS KQGDYGLSET  120
ESPLPALDSE ATESISRQTS NGENSVGSFT KETSTRASWL CDRQPQAVET ETETKPSTSA  180
CSEQGKDSSI EKFPEVGYEH GVIIRKKRGQ RKRKDCSRAV KERSVGESDN LGSSNSVSTA  240
NKETSTKNSE PAAVFRHRMD SQKRARYRRV IRQHMDIGTI KSRIIGQSIK SAKELFRDLL  300
LLANNALVFY SRRTREYKAA ITLRQLVMRD YKLHCRGYCH EATRPSFRAI LR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105111KKQRSKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012830514.11e-151PREDICTED: uncharacterized protein LOC105951610
TrEMBLA0A4D8XWA50.0A0A4D8XWA5_SALSN; Uncharacterized protein
STRINGMigut.H01498.1.p1e-151(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55341924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.19e-31DNA-binding bromodomain-containing protein