PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00007416-RA_Salv
Common NameMYB30
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 277aa    MW: 31214.3 Da    PI: 8.2203
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00007416-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.8e-174087148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd +lvd ++q G gtW+  ++  g+ R++k+c++rw +yl
  SMil_00007416-RA_Salv 40 KGAWTPEEDRILVDFITQNGHGTWRNLPHLAGLLRCGKSCRLRWTNYL 87
                           79******************************99************97 PP
2Myb_DNA-binding55.41.4e-1793138148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg++++eE+  ++++++ lG++ W++Ia++++ gRt++++k++w+++l
  SMil_00007416-RA_Salv  93 RGPFSPEEENTIIHLHEALGNK-WAAIASHLP-GRTDNDVKNFWNSHL 138
                            89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.0263587IPR017930Myb domain
SuperFamilySSF466899.36E-2938134IPR009057Homeodomain-like
SMARTSM007176.5E-113989IPR001005SANT/Myb domain
PfamPF002491.5E-134087IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-214194IPR009057Homeodomain-like
CDDcd001671.31E-84287No hitNo description
PROSITE profilePS5129425.24788142IPR017930Myb domain
SMARTSM007173.9E-1792140IPR001005SANT/Myb domain
PfamPF002497.9E-1793138IPR001005SANT/Myb domain
CDDcd001671.12E-1195138No hitNo description
Gene3DG3DSA:1.10.10.603.8E-2795141IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
LRVLLCSENW LKMGMKKEKE ETTKKKKGRR PCCLREGVTK GAWTPEEDRI LVDFITQNGH  60
GTWRNLPHLA GLLRCGKSCR LRWTNYLRPD IKRGPFSPEE ENTIIHLHEA LGNKWAAIAS  120
HLPGRTDNDV KNFWNSHLRK RFDSSKPSSS SKSGSPTCLS IPFNNVNTKG DYFLHLWNTK  180
VGESFRNVHE AGAASLTSTS QSSSSFTKVT ETCKTSTPVD MELELWDCKK EPEDFAAFSD  240
TSKSYEVDDS SDAMLKLLLD FPVGGNDMAF LEPPSLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-27381445110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0593840.0KF059384.1 Salvia miltiorrhiza MYB-related transcription factor (MYB30) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076175.11e-109transcription factor MYB3-like
SwissprotQ9M2D92e-74MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A059PRR80.0A0A059PRR8_SALMI; MYB-related transcription factor
STRINGMigut.F01122.1.p6e-95(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.16e-70myb domain protein 17
Publications ? help Back to Top
  1. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]