PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00007326-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bZIP

Protein Properties

Length: 332aa MW: 36865.6 Da PI: 10.0137

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00007326-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	27.8	5.5e-09	2	25	11	34
HHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 11 qkNReAArrsRqRKkaeieeLeek 34 ++NReAAr+sR+RKka++++Le+ SMil_00007326-RA_Salv 2 AQNREAARKSRLRKKAYVQQLETS 25 89*******************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.3E-6	2	39	No hit	No description
SuperFamily	SSF57959	1.27E-5	2	36	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
LAQNREAARK SRLRKKAYVQ QLETSRLKLA QLELELEKAR QQGMLMAGAT AHMGLCGSVS 60 SGRGAGEEDQ RAKEGAADVH RRGGATRNGG ESAQPLLQSV PHQERCSQGR RLLLGLRHVE 120 DLRRALLPLD RGLQALRAHQ CTHALVVMPQ LQPLTDHQTA DVDNLKHSCM QAEDALSQGM 180 EKLQQTLAQS VTFLPPGAGN YCSQTAFALE NLESLESFIN QADHLRQQTL QHMSRILTTR 240 QAANGLVAFG EYFQRLRTLS SLWSARQRLS GIVGSPSYVS VEWKRGTSFY EHGHAIERGR 300 EVKESTGRGD RASRSFQLAR IRYSNESICA SF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012829824.1	3e-94	PREDICTED: transcription factor TGA4-like isoform X1
Refseq	XP_012829825.1	2e-94	PREDICTED: transcription factor TGA4-like isoform X2
Swissprot	Q93ZE2	1e-62	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A0A4D8ZUK4	1e-106	A0A4D8ZUK4_SALSN; Transcription factor TGA
STRING	Migut.C00214.1.p	8e-94	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-53	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]