PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00006961-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WOX
Protein Properties Length: 249aa    MW: 27787.6 Da    PI: 6.6327
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00006961-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.33.5e-202990257
                           T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
               Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                           ++R+t+t++q+++L++l+++   r p+ae+++++++kl    +++ ++V++WFqN++a+e++
  SMil_00006961-RA_Salv 29 STRWTPTTDQIRILKDLYYNngVRSPTAEQIQRISAKLrqygKIEGKNVFYWFQNHKARERQ 90
                           58*****************8678*************************************97 PP
2Wus_type_Homeobox114.64.7e-372892265
      Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                           ++tRWtPt++Qi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
  SMil_00006961-RA_Salv 28 SSTRWTPTTDQIRILKDLYYnNGVRSPTAEQIQRISAKLRQYGKIEGKNVFYWFQNHKARERQKK 92
                           789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.24E-111992IPR009057Homeodomain-like
PROSITE profilePS5007110.5272591IPR001356Homeobox domain
SMARTSM003897.4E-62795IPR001356Homeobox domain
CDDcd000862.74E-73092No hitNo description
PfamPF000461.6E-173090IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-73090IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEQQQGGNEA DQSGGGGKTA TSFLCRQSST RWTPTTDQIR ILKDLYYNNG VRSPTAEQIQ  60
RISAKLRQYG KIEGKNVFYW FQNHKARERQ KKRFTADIPM HSHNHIYTKF PPPPPGNFAS  120
SSASSAPALL NVGSYGYGSV AMEKSFRECS ITPSANVGGQ NFAWIGVDPY SSPYPFLERK  180
RYINDQTLET AGEDDDDDDE APEIETLPLF PMHGDIKQEW HHRGDDAIAA GSRASLELSL  240
NSYAAGFNR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). May induce shoot stem cells activity in order to maintain the stem cell identity (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100154.11e-116protein WUSCHEL
SwissprotQ6YBV11e-91WUS_ANTMA; Protein WUSCHEL
TrEMBLA0A4D8ZSM61e-129A0A4D8ZSM6_SALSN; Uncharacterized protein
STRINGXP_009792214.12e-85(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76042331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.17e-44WOX family protein