PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00006949-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 288aa    MW: 32884.2 Da    PI: 8.2
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00006949-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY75.46.9e-24122181259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnhe 59 
                            +D y+WrKYGqK++  se+prsY+rCt++  gC++ k+v+r + d+ + ++tY ++H ++
  SMil_00006949-RA_Salv 122 EDNYAWRKYGQKTIMTSEYPRSYFRCTHKqeGCKALKQVQRIKGDEIMYQTTYLNHHSCK 181
                            8***************************9999*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-22114181IPR003657WRKY domain
PROSITE profilePS5081120.002116179IPR003657WRKY domain
SuperFamilySSF1182901.15E-22116181IPR003657WRKY domain
SMARTSM007745.2E-29121182IPR003657WRKY domain
PfamPF031063.7E-22122181IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
LKMGSLSFDN FHARKKKAMV ELVKGKEIAV QLQTLLHKPV SDRGPVSPKQ LAVLIYRSFS  60
DTLSELSSCT TPPDSDQIPA AEGSSACSAE SPKKKRGVKD RRGCYKRRRT SDSWVTRSPT  120
IEDNYAWRKY GQKTIMTSEY PRSYFRCTHK QEGCKALKQV QRIKGDEIMY QTTYLNHHSC  180
KETLRPPPLL VNSDPIDPNL ISFQTPKQDQ IQSSKKLTVK CEECVSEDAS NEAKSTLEDP  240
WHDITGLDPL GYKPLWFPYQ DEVESASLHG LDMEVNQLFD IQNFHYFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-14120181769OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193108KKRGVKDRRGCYKRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076580.16e-90probable WRKY transcription factor 70
TrEMBLA0A4D8YG671e-155A0A4D8YG67_SALSN; Uncharacterized protein
STRINGMigut.F00572.1.p1e-74(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61992233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.16e-35WRKY DNA-binding protein 70