PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00006908-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Dof

Protein Properties

Length: 240aa MW: 24894.1 Da PI: 7.8234

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00006908-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	128.3	2.3e-40	24	84	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprCdstntkfCyynny+lsqPr+fCk+CrryWtkGGalrn+PvGgg+rkn k+s SMil_00006908-RA_Salv 24 EQEHLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNSKRS 84 57899****************************************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.3E-33	26	82	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-23	27	76	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.581	28	82	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	30	66	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MQDPSLYSQI KAQVQQQQQP QFPEQEHLKC PRCDSTNTKF CYYNNYNLSQ PRHFCKNCRR 60 YWTKGGALRN IPVGGGSRKN SKRSSSSSSS AASSSPSATA KRPAAAVATA SPVKNESTSS 120 NGETPLKGEN FVGQFGNLLE AGGSFSSLLG SNGGHFGNFL DGLGTSGSGL QMSDHFGDPG 180 SGQNVDPRVL EGDLSNNADG FLSIHGGDGG GGGGGDGGCW GGGGNGWPDL AIYTPGSTFL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM476036	5e-41	AM476036.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X057671.24, clone ENTAV 115.
GenBank	FQ383028	5e-41	FQ383028.1 Vitis vinifera clone SS0ABG34YI09.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011072481.1	1e-97	dof zinc finger protein DOF3.1-like
Swissprot	O82155	3e-43	DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBL	A0A2G9H2L6	1e-96	A0A2G9H2L6_9LAMI; Uncharacterized protein
STRING	Migut.I01007.1.p	2e-92	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	2e-32	DOF zinc finger protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]