PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00006712-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 305aa    MW: 33871.9 Da    PI: 6.8727
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00006712-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1084.5e-34146204159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDgy+WrKYGqK vk+s+fprsYYrCts+ C vkk+vers++dp++v++tYeg+H+h+
  SMil_00006712-RA_Salv 146 LDDGYRWRKYGQKAVKNSPFPRSYYRCTSPACGVKKRVERSSDDPSIVVTTYEGTHTHS 204
                            59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.6E-35131206IPR003657WRKY domain
SuperFamilySSF1182901.01E-29138206IPR003657WRKY domain
PROSITE profilePS5081131.571141206IPR003657WRKY domain
SMARTSM007744.0E-40146205IPR003657WRKY domain
PfamPF031061.9E-27147203IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEEEKRKEAA AKASSNNQSM MINQEISSGS LFDISYAEAE ADHLLQKNCS LGFMDVQDFS  60
CPSSAFDDLL HNMVSEPPPE VLTNPATPNA SSISSSSTEA DRKKNDEEEQ EEANKSRKQL  120
KLKKKNQKRQ RDPRFAFMTK SEIDHLDDGY RWRKYGQKAV KNSPFPRSYY RCTSPACGVK  180
KRVERSSDDP SIVVTTYEGT HTHSCPITPR GAAAGFGVIP IEASAFHGGA SSSLFDMPQI  240
LDYPRPLQQQ RPYFTNLTLQ PPPLSNNANS RVPPPFLSAA AAATRDHGLL QDMLPSEMLK  300
EPKGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-291392061077Probable WRKY transcription factor 4
2lex_A2e-291392061077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8231270.0KM823127.1 Salvia miltiorrhiza WRKY protein (WRKY4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100744.26e-83probable WRKY transcription factor 48, partial
SwissprotO229004e-53WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A0D5Y9Z70.0A0A0D5Y9Z7_SALMI; WRKY protein
STRINGXP_010259241.17e-78(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13092479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.15e-48WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]