PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00006684-RA_Salv
Common NameWRKY10
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 339aa    MW: 37762.9 Da    PI: 5.5575
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00006684-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY955.3e-30122182259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                            dDgy+WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs++dp+v+eitY+g+H+++
  SMil_00006684-RA_Salv 122 DDGYSWRKYGQKDILGARYPRSYYRCTYRlvqNCWATKQVQRSDDDPTVFEITYKGTHTCN 182
                            8***************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.551116184IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.3E-29118183IPR003657WRKY domain
SuperFamilySSF1182901.7E-26120183IPR003657WRKY domain
SMARTSM007747.4E-40121183IPR003657WRKY domain
PfamPF031066.1E-27122181IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MYLGIQDGDQ RAVQGMEKAK QLHSHLCSTS PSRAQDLLMQ RILSSYEKAL LILNPKEHTP  60
PPSAAAVDSP ISVVDGICRS EDLNNSFRDN QDYNASKKRK MQPTWMEQVK VNPENGLEGP  120
ADDGYSWRKY GQKDILGARY PRSYYRCTYR LVQNCWATKQ VQRSDDDPTV FEITYKGTHT  180
CNQSTNAPVV PPPVSQEKQE LQQQSQALLK LKASLRVNTD TGNSETMPAH FSFPSTYELC  240
DTDNHYISFS DLVGDGNLGA YSPLFLSPAT SETNYFSPAP HHMASFGGSQ GYQHTESDIA  300
DIVSAHASTT NSPIGSMDFP IDPLELDPNF PFNTSGFFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-18122181968OsWRKY45
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8231330.0KM823133.1 Salvia miltiorrhiza WRKY protein (WRKY10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020551475.11e-160probable WRKY transcription factor 53
TrEMBLA0A0D5Y9Z50.0A0A0D5Y9Z5_SALMI; WRKY protein
STRINGMigut.E01246.1.p1e-124(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18432467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.12e-58WRKY family protein