PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00006374-RA_Salv
Common NameWRKY8
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 300aa    MW: 33675 Da    PI: 4.9326
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00006374-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY932.1e-2981139259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dpk++++tY  eHnh+
  SMil_00006374-RA_Salv  81 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRLDPKMLVVTYYCEHNHN 139
                            69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.4E-3176141IPR003657WRKY domain
SuperFamilySSF1182901.23E-2579141IPR003657WRKY domain
SMARTSM007741.6E-3580140IPR003657WRKY domain
PROSITE profilePS5081132.12281141IPR003657WRKY domain
PfamPF031061.7E-2582138IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDAGFNRHRH RFVNELDDSD NSAGNSGGDS PRSAVSTDTK IASTSSSKRS RRAIQKRVVS  60
VPIKDVEGLR QKGDQISAPP SDSWAWRKYG QKPIKGSPYP RGYYRCSSSK GCPARKQVER  120
SRLDPKMLVV TYYCEHNHNW PVSKSSHHKT AAARNVKTPI SEEEEEEEEE EEEEGEEVEE  180
EKKPRINLSD QTRDEVAIGA ADNKFSTNNH GGEGLSIQNG EFGWFADFEC ANFTMLESPM  240
LAEERISTDS EMAMIFTMGD QEDESLFADL GELPECSTVF RRGMVQREVE QRRPGLATTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-20811411574WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8231310.0KM823131.1 Salvia miltiorrhiza WRKY protein (WRKY8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101421.11e-120probable WRKY transcription factor 65
TrEMBLA0A0D5Y9840.0A0A0D5Y984_SALMI; WRKY protein
STRINGXP_009595576.12e-96(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64752333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.12e-66WRKY DNA-binding protein 65