PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00006334-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | G2-like | ||||||||
Protein Properties | Length: 396aa MW: 43329.1 Da PI: 6.3889 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88.1 | 8.2e-28 | 122 | 176 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFv+aveqL G +kA+P++ilelm++++Lt+++++SHLQkYR++ SMil_00006334-RA_Salv 122 KVKVDWTPELHRRFVQAVEQL-GVDKAVPSRILELMGIDCLTRHNIASHLQKYRSH 176 5689*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.152 | 119 | 178 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-26 | 120 | 179 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.05E-18 | 121 | 179 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-26 | 122 | 176 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.1E-8 | 125 | 174 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0010638 | Biological Process | positive regulation of organelle organization | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MEGFSIDESE FVDFAGGNLL DSIDFDDLFL GISDGDVLPD LEMDPELLAE FSVSASEESE 60 VKTTPLDKSD DENTSEKQQQ QHVIPAEEAA ACGKDEMNPS PKEADRGRKS ISHSKNSSGK 120 RKVKVDWTPE LHRRFVQAVE QLGVDKAVPS RILELMGIDC LTRHNIASHL QKYRSHRKHL 180 LAREAEAASW SQRRQVYGGP AAAAGGKREH VNPWIAPTMG FPPVTPMPHF RPLHVWGHPS 240 VDQSVMPMWP KHLTPSPPPP PPPHAWHPSQ PPPADHSFWL PHHHHVPTQG TPCFPPQHLP 300 PTRFPTPAVA GIPPPPVMYK VEQAGVGVPT APPPGQTLPQ PPSDVHPSKE SVDAAIGDVL 360 SKPWLPLPLG LKPPSMDSVV VELQRQGVPK VPPTCA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 7e-16 | 118 | 174 | 1 | 57 | ARR10-B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that functions with GLK2 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:17533111, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:17533111, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00022 | PBM | Transfer from AT2G20570 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011100244.1 | 1e-179 | probable transcription factor GLK1 | ||||
Swissprot | Q9SIV3 | 2e-93 | GLK1_ARATH; Transcription activator GLK1 | ||||
TrEMBL | A0A4D8ZR69 | 0.0 | A0A4D8ZR69_SALSN; Uncharacterized protein | ||||
STRING | VIT_12s0028g03100.t01 | 1e-160 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2532 | 23 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 3e-77 | GBF's pro-rich region-interacting factor 1 |